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@@ -8,7 +8,8 @@
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- Adjust configuration parameters in files *config_testing.txt*, *config_normal.txt* and *config_tumor.txt*.
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- Run the commands listed in the following subsections to launch Son of Grid Engine (SGE) jobs to extract, group patches in HDF5 files and create a lookup table for every HDF5 file.
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## 1.2 Extract and group
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-- qsub split_main.sh ./config_testing.txt
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+- qsub split_main.sh ./config_testing.txt
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+-- *split_main.sh* in turn submits *split_grp.sh* which in turns runs *split_grp.py* in array job fashin.
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- qsub split_main.sh ./config_normal.txt
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- qsub split_main.sh ./config_tumor.txt
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Mike Mikailov