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@@ -25,7 +25,7 @@ The lookup tables are created only once and used at [Prediction](#2-prediction)
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- Run commands listed in the below subsections to launch SGE jobs to generate prediction matrices.
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## 2.1 With color normalization
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- qsub process_main.sh ./config_testing_cn_true.txt
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+-- *process_main.sh* in turn submits a number of SGE jobs using *process_array.sh* which in turn runs *process_images_grp_normalization_wli.py* in the array jobs generated for every slide. Number of tasks in an array job determined automatically based on the number of groups in the corresponding HDF5 file.
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- qsub process_main.sh ./config_normal_cn_true.txt
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- qsub process_main.sh ./config_tumor_cn_true.txt
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Mike Mikailov