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The lookup tables are created only once and used at [Prediction](#2-prediction) stage for launching array job tasks. These tasks are run in parallel and scalable manner - if there are not enough resourcs for running all tasks then they are queued up automatically and started as resources become available. Each task processes only one group.
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The lookup tables are created only once and used at [Prediction](#2-prediction) stage for launching array job tasks. These tasks are run in parallel and scalable manner - if there are not enough resourcs for running all tasks then they are queued up automatically and started as resources become available. Each task processes only one group.
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## 1.3 Retreiving wall-clock time statistics for extraction and grouping
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## 1.3 Retreiving wall-clock time statistics for extraction and grouping
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-Run *time_stats_sg_V2.sh* Linux scrip with two arguments, type of slides (test, normal or tumor) and the root directory of the results:
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+Run *time_stats_sg_V2.sh* Linux scrip with two arguments: a) type of slides (test, normal or tumor) and b) the root directory of the results:
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- time bash time_stats_sg_V2.sh [test | normal | tumor] ROOT_DIR
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- time bash time_stats_sg_V2.sh [test | normal | tumor] ROOT_DIR
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-As an example run:
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+An example run:
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- time bash wall_clock_time_split_group_V2.sh test /scratch/mikem/UserSupport/weizhe.li/runs_split_group/448_400_7691440
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- time bash wall_clock_time_split_group_V2.sh test /scratch/mikem/UserSupport/weizhe.li/runs_split_group/448_400_7691440
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# 2 Prediction
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# 2 Prediction
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Mike Mikailov