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@@ -24,7 +24,7 @@ The lookup tables are created only once and used at [Prediction](#2-prediction)
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- Additionally adjust configuration parameters in files, *config_testing_cn_true.txt*, *config_normal_cn_true.txt*, *config_tumor_cn_true.txt*.
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- Run commands listed in the below subsections to launch SGE jobs to generate prediction matrices.
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## 2.1 With color normalization
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-- qsub process_main.sh ./config_testing_cn_true.txt
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+- qsub process_main.sh ./config_testing_cn_true.txt
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-- *process_main.sh* in turn submits *process_array.sh* which runs *process_images_grp_normalization_wli.py* in array jobs generated for every slide.
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- qsub process_main.sh ./config_normal_cn_true.txt
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- qsub process_main.sh ./config_tumor_cn_true.txt
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Mike Mikailov