- Run the commands listed in the following subsections to launch Son of Grid Engine (SGE) jobs to extract, group patches in HDF5 files and create a lookup table for every HDF5 file.
## 1.2 Extract and group
- qsub split_main.sh ./config_testing.txt
+-- *split_main.sh* in turn submits *split_grp.sh* which in turns runs *split_grp.py* in array job fashion. Every task in the array job processes one slide.
Mike Mikailov