Rename dldp/dldp/heatmap_pred/heatmap_arr.sh to dldp/dldp/heatmap_pred/HPC_SC20/heatmap_arr.sh

heatmap_arr.sh

@@ -0,0 +1,31 @@
+#$ -cwd
+#$ -A  weizhe.li
+#$ -l h_rt=048:00:00
+#$ -l h_vmem=10G
+#$ -S /bin/sh
+#$ -j y
+#$ -N heatmap_arr
+
+# $listfile $Folder_Prediction_Results $Folder_dimension $index_path
+
+echo "Running task $SGE_TASK_ID of job $JOB_ID on $HOSTNAME"
+
+source /projects/mikem/UserSupport/weizhe.li/split_wsi/set_env.sh
+
+listfile=$1
+
+export dir=$(awk "NR==$SGE_TASK_ID" $listfile)
+
+export Folder_Prediction_Results=$2
+export Folder_dimension=$3
+export index_path=$4
+export Folder_Heatmap="$Folder_Prediction_Results"/"$dir"/heatmap
+mkdir -p $Folder_Heatmap
+
+# debug
+echo "Folder_dimension = $Folder_dimension"
+echo "index_path = $index_path"
+
+
+PROG=heatmap_assembly.py
+time python $PROG