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@@ -45,6 +45,9 @@ The \*.sh files mentioned in sections 2.1 and 2.2 below are located under <a hr
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After the predictions matrices have been generated an SGE job using *heatmap_main.sh* SGE scrip could be launched to genertae heatmaps. Two arguments for this launch are: a) type of the slides (test, normal or tumor); b) the root directory of the results, like in below example run:
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- qsub heatmap_main.sh test results_directory
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-- *heatmap_main.sh* in turn calls *heatmap_arr.sh* which runs *heatmap_assembly.py* for the heatmap stitching of all slides in parallel/scalable manner.
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+
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+The files mentioned in this section are located under <a href="https://github.com/DIDSR/HPC_DPAI/tree/master/heatmap_stitch">heatmap_stitch</a> directory.
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+
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# 4 Retreiving run-time statistics for prediction
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## 4.1 CPU time
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In *time_all_stats_pred.sh* file adjust job results root directory, DIR and slides type, PREFIX (normal, test or tumor), like below:
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Mike Mikailov