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@@ -25,7 +25,7 @@ The lookup tables are created only once and used at [Prediction](#2-prediction)
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The \*.sh file mentioned in this section is located under <a href="https://github.com/DIDSR/HPC_DPAI/tree/master/image_patch_extract">image_patch_extract</a> directory while the config_*.txt files are located at the <a href="https://github.com/DIDSR/HPC_DPAI"> root </a> directory of the codes.
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# 2 Prediction
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-- Additionally adjust configuration parameters in files, *config_testing_cn_true.txt*, *config_normal_cn_true.txt*, *config_tumor_cn_true.txt*.
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+- Additionally adjust configuration parameters in files, *config_testing_cn_true.txt*, *config_normal_cn_true.txt*, *config_tumor_cn_true.txt* located at at the <a href="https://github.com/DIDSR/HPC_DPAI"> root </a> directory of the codes.
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- Run commands listed in the below subsections to launch SGE jobs to generate prediction matrices.
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## 2.1 With color normalization
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- qsub process_main.sh ./config_testing_cn_true.txt
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Mike Mikailov