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@@ -16,9 +16,9 @@
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The \*.sh files mentioned in this section are located under <a href="https://github.com/DIDSR/HPC_DPAI/tree/master/image_patch_extract">image_patch_extract</a> directory while the config_*.txt files are at the <a href="https://github.com/DIDSR/HPC_DPAI"> root </a> directory of the codes.
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The \*.sh files mentioned in this section are located under <a href="https://github.com/DIDSR/HPC_DPAI/tree/master/image_patch_extract">image_patch_extract</a> directory while the config_*.txt files are at the <a href="https://github.com/DIDSR/HPC_DPAI"> root </a> directory of the codes.
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## 1.2 Create lookup tables
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## 1.2 Create lookup tables
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-- bash create_lookup_grp.sh ./config_testing.txt
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-- bash create_lookup_grp.sh ./config_normal.txt
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-- bash create_lookup_grp.sh ./config_tumor.txt
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+- bash image_patch_extract/create_lookup_grp.sh ./config_testing.txt
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+- bash image_patch_extract/create_lookup_grp.sh ./config_normal.txt
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+- bash image_patch_extract/create_lookup_grp.sh ./config_tumor.txt
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The lookup tables are created only once and used at [Prediction](#2-prediction) stage for launching array job tasks. These tasks are run in parallel and scalable manner - if there are not enough resourcs for running all tasks then they are queued up automatically and started as resources become available. Each task processes only one group.
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The lookup tables are created only once and used at [Prediction](#2-prediction) stage for launching array job tasks. These tasks are run in parallel and scalable manner - if there are not enough resourcs for running all tasks then they are queued up automatically and started as resources become available. Each task processes only one group.
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Mike Mikailov