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@@ -13,7 +13,7 @@
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-- *split_main.sh* in turn submits *split_grp.sh* which in turns runs *split_grp.py* in array job fashion. Every task in the array job processes one slide.
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-- *split_main.sh* in turn submits *split_grp.sh* which in turns runs *split_grp.py* in array job fashion. Every task in the array job processes one slide.
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- qsub split_main.sh ./config_normal.txt
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- qsub split_main.sh ./config_normal.txt
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- qsub split_main.sh ./config_tumor.txt
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- qsub split_main.sh ./config_tumor.txt
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-
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+The files mentioned above are located under image_patch_extract.
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## 1.2 Create lookup tables
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## 1.2 Create lookup tables
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- bash create_lookup_grp.sh ./config_testing.txt
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- bash create_lookup_grp.sh ./config_testing.txt
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- bash create_lookup_grp.sh ./config_normal.txt
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- bash create_lookup_grp.sh ./config_normal.txt
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Mike Mikailov