Update readme.md

readme.md

@@ -14,7 +14,7 @@
 - qsub split_main.sh ./config_normal.txt  
 - qsub split_main.sh ./config_tumor.txt  
 
-The \*.sh files mentioned above are located under <a href="https://github.com/DIDSR/HPC_DPAI/tree/master/image_patch_extract">image_patch_extract</a> directory while the config_*.txt files are at the <a href="https://github.com/DIDSR/HPC_DPAI"> root </a> directory of the codes.
+The \*.sh files mentioned in this section are located under <a href="https://github.com/DIDSR/HPC_DPAI/tree/master/image_patch_extract">image_patch_extract</a> directory while the config_*.txt files are at the <a href="https://github.com/DIDSR/HPC_DPAI"> root </a> directory of the codes.
 ## 1.2 Create lookup tables
 - bash create_lookup_grp.sh ./config_testing.txt  
 - bash create_lookup_grp.sh ./config_normal.txt  
@@ -22,6 +22,8 @@ The \*.sh files mentioned above are located under <a href="https://github.com/DI
 
 The lookup tables are created only once and used at [Prediction](#2-prediction) stage for launching array job tasks. These tasks are run in parallel and scalable manner - if there are not enough resourcs for running all tasks then they are queued up automatically and started as resources become available. Each task processes only one group. 
 
+The \*.sh file mentioned in this section is located under <a href="https://github.com/DIDSR/HPC_DPAI/tree/master/image_patch_extract">image_patch_extract</a> directory while the config_*.txt files are located at the <a href="https://github.com/DIDSR/HPC_DPAI"> root </a> directory of the codes.
+
 # 2 Prediction
 - Additionally adjust configuration parameters in files, *config_testing_cn_true.txt*, *config_normal_cn_true.txt*, *config_tumor_cn_true.txt*.
 - Run commands listed in the below subsections to launch SGE jobs to generate prediction matrices.