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@@ -39,8 +39,9 @@ After the predictions matrices have been generated an SGE job using *heatmap_mai
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- qsub heatmap_main.sh test /scratch/mikem/UserSupport/weizhe.li/runs_process_cn_True/testing_wnorm_448_400_7690953
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- qsub heatmap_main.sh test /scratch/mikem/UserSupport/weizhe.li/runs_process_cn_True/testing_wnorm_448_400_7690953
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# 4 Retreiving run-time statistics
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# 4 Retreiving run-time statistics
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-In *time_all_stats_pred.sh* file adjust job results root directory, like below:
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+In *time_all_stats_pred.sh* file adjust job results root directory, DIR and slides type, PREFIX (normal, test or tumor), like below:
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- DIR=/scratch/mikem/UserSupport/weizhe.li/runs_process_cn_False/normal_wnorm_448_400_7691563
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- DIR=/scratch/mikem/UserSupport/weizhe.li/runs_process_cn_False/normal_wnorm_448_400_7691563
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+- PREFIX=normal
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Then run:
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Then run:
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- time bash ./time_all_stats_pred.sh
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- time bash ./time_all_stats_pred.sh
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Mike Mikailov