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- TYPE=tumor
- source ./config_generic_cn_true.txt
- FILE_DIR=/scratch/wxc4/CAMELYON16-training/tumor
- LISTFILE=list_tumor.txt
- SPLIT_BASE_DIR=/scratch/mikem/UserSupport/weizhe.li/"$TYPE"_sg_"$PATCH_SIZE"_"$SPLIT_SIZE"
- LOOKUP_FILE="$SPLIT_BASE_DIR"/lookup.txt # cannot be csv extension
- NUM_HDF5_DS="$SPLIT_BASE_DIR"/num_hdf5_ds.txt
- export INDEX_DIR=/home/weizhe.li/li-code4hpc/pred_dim_0314/training-updated/tumor/patch_index
- # comes from config_generic.txt
- # PATCH_SIZE=448
- # SPLIT_SIZE=400
- # export PRED_SIZE=224
- # Model for color normalization
- # export MCN=/home/weizhe.li/Training/HNM_models/noise_norm/googlenetv1_norm_noise_0212_02.14.20_13:06_Vahadane-01-0.92.hdf5
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