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- #$ -cwd
- #$ -A weizhe.li
- #$ -l h_rt=001:00:00
- #$ -S /bin/sh
- #$ -j y
- #$ -o sysout_main
- #$ -N split_main
- echo "Running job $JOB_ID on $HOSTNAME"
- QSUB=/opt/sge_root/bin/lx-amd64/qsub
- ARRAY_SCRIPT=split_grp.sh
- # Get params
- # source ./config.txt
- # CNFG_FILE="./config_normal.txt"
- CNFG_FILE=$1
- source $CNFG_FILE
- ls -1 $FILE_DIR > $LISTFILE
- mv $SPLIT_BASE_DIR "$SPLIT_BASE_DIR"_"$JOB_ID" 2>/dev/null
- mkdir -p $SPLIT_BASE_DIR
- SG_DIR=/scratch/mikem/UserSupport/weizhe.li/runs_split_group
- mkdir -p $SG_DIR
- BASE_DIR="$TYPE"_"$SG_DIR"/"$PATCH_SIZE"_"$SPLIT_SIZE"_"$JOB_ID"
- ST=1
- EN=`cat $LISTFILE | wc -l`
- SYSOUT_DIR="$BASE_DIR"/sysout
- mkdir -p $SYSOUT_DIR
- # test
- # ST=1
- # EN=3
- echo "$QSUB -pe thread -t "$ST"-"$EN" -o $SYSOUT_DIR $ARRAY_SCRIPT"
- $QSUB -pe thread 1 -t "$ST"-"$EN" -o $SYSOUT_DIR -N sg_"$TYPE" $ARRAY_SCRIPT $CNFG_FILE
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