config_tumor.txt 674 B

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  1. TYPE=tumor
  2. source ./config_generic.txt
  3. FILE_DIR=/scratch/wxc4/CAMELYON16-training/tumor
  4. LISTFILE=list_tumor.txt
  5. SPLIT_BASE_DIR=/scratch/mikem/UserSupport/weizhe.li/"$TYPE"_sg_"$PATCH_SIZE"_"$SPLIT_SIZE"
  6. LOOKUP_FILE="$SPLIT_BASE_DIR"/lookup.txt # cannot be csv extension
  7. NUM_HDF5_DS="$SPLIT_BASE_DIR"/num_hdf5_ds.txt
  8. export INDEX_DIR=/home/weizhe.li/li-code4hpc/pred_dim_0314/training-updated/tumor/patch_index
  9. # comes from config_generic.txt
  10. # PATCH_SIZE=448
  11. # SPLIT_SIZE=400
  12. # export PRED_SIZE=224
  13. # Model for color normalization
  14. # export MCN=/home/weizhe.li/Training/HNM_models/noise_norm/googlenetv1_norm_noise_0212_02.14.20_13:06_Vahadane-01-0.92.hdf5