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- #$ -cwd
- #$ -A weizhe.li
- #$ -l h_rt=048:00:00
- #$ -S /bin/sh
- #$ -j y
- # $ -N split_grp comes from split_main.sh
- echo "Running $SGE_TASK_ID of job $JOB_ID on $HOSTNAME"
- source /projects/mikem/UserSupport/weizhe.li/split_wsi/set_env.sh
- # Get params
- # source ./config.txt
- source $1
- FILE=$(awk "NR==$SGE_TASK_ID" $LISTFILE)
- export PYTHONUNBUFFERED=TRUE
- PROG=split_grp.py
- time python $PROG $FILE_DIR $FILE $PATCH_SIZE $SPLIT_SIZE $SPLIT_BASE_DIR
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