Geografic-Information-System/gui/wxpython/modules/vkrige.py

"""
MODULE:    vkrige

AUTHOR(S): Anne Ghisla <a.ghisla AT gmail.com>

PURPOSE:   Dedicated GUI for v.krige script.

DEPENDS:   R 2.x, packages gstat, maptools and spgrass6, optional: automap

COPYRIGHT: (C) 2009 by the GRASS Development Team

This program is free software under the GNU General Public
License (>=v2). Read the file COPYING that comes with GRASS
for details.
"""

#@TODO move here imports related to wxGUI

# generic imports
import os
import sys
from tempfile import gettempdir
import time
import thread
from core.utils import _

# dependencies to be checked once, as they are quite
# time-consuming. cfr. grass.parser.

try:
    import grass.script as grass
except ImportError:
    sys.exit(_("No GRASS-python library found."))

from core import globalvar
from gui_core import gselect
from core import gconsole
from gui_core import goutput
from core.settings import UserSettings
from gui_core.widgets import GNotebook
from core.giface import Notification
#import help

import wx
# import wx.lib.plot as plot # for plotting the variogram.
import rpy2.robjects as robjects
import rpy2.rinterface as rinterface

# global variables
# instead of sys.maxint, not working with SpinCtrl on 64bit [reported by
# Bob Moskovitz]
maxint = 1e6

#@TODO move away functions not regarding the GUI


class KrigingPanel(wx.Panel):
    """Main panel. Contains all widgets except Menus and Statusbar. """

    def __init__(self, parent, Rinstance, controller, *args, **kwargs):
        wx.Panel.__init__(self, parent, *args, **kwargs)

        self.parent = parent
        self.border = 4

        #    1. Input data
        InputBoxSizer = wx.StaticBoxSizer(
            wx.StaticBox(
                self,
                id=wx.ID_ANY,
                label=_("Input Data")),
            orient=wx.HORIZONTAL)

        flexSizer = wx.FlexGridSizer(cols=3, hgap=5, vgap=5)
        flexSizer.AddGrowableCol(1)

        flexSizer.Add(
            item=wx.StaticText(
                self,
                id=wx.ID_ANY,
                label=_("Point dataset:")),
            flag=wx.ALIGN_CENTER_VERTICAL)
        self.InputDataMap = gselect.VectorSelect(parent=self,
                                                 ftype='points',
                                                 updateOnPopup=False)
        self.InputDataMap.SetFocus()
        flexSizer.Add(item=self.InputDataMap, flag=wx.ALIGN_CENTER_VERTICAL)

        RefreshButton = wx.Button(self, id=wx.ID_REFRESH)
        RefreshButton.Bind(wx.EVT_BUTTON, self.OnButtonRefresh)
        flexSizer.Add(item=RefreshButton, flag=wx.ALIGN_CENTER_VERTICAL)

        flexSizer.Add(
            item=wx.StaticText(
                self,
                id=wx.ID_ANY,
                label=_("Numeric column:")),
            flag=wx.ALIGN_CENTER_VERTICAL)
        self.InputDataColumn = gselect.ColumnSelect(self, id=wx.ID_ANY)
        flexSizer.Add(item=self.InputDataColumn)

        self.InputDataMap.GetChildren()[0].Bind(
            wx.EVT_TEXT, self.OnInputMapChanged)
        self.InputDataColumn.GetChildren()[0].Bind(
            wx.EVT_TEXT, self.OnInputColumnChanged)

        InputBoxSizer.Add(item=flexSizer)

        # 2. Kriging. In book pages one for each R package. Includes variogram
        # fit.
        KrigingSizer = wx.StaticBoxSizer(
            wx.StaticBox(
                self,
                id=wx.ID_ANY,
                label=_("Kriging")),
            wx.HORIZONTAL)

        self.RPackagesBook = GNotebook(
            parent=self, style=globalvar.FNPageDStyle)

        # , "geoR"]: #@TODO: enable it if/when it'll be implemented.
        for Rpackage in ["gstat"]:
            self.CreatePage(
                package=Rpackage,
                Rinstance=Rinstance,
                controller=controller)

        # Command output. From menuform module, cmdPanel class
        self._gconsole = gconsole.GConsole(guiparent=self)
        self.goutput = goutput.GConsoleWindow(
            parent=self, gconsole=self._gconsole, margin=False)
        self.goutputId = self.RPackagesBook.GetPageCount()
        self.outpage = self.RPackagesBook.AddPage(
            page=self.goutput, text=_("Command output"), name='output')
        self._gconsole.Bind(
            gconsole.EVT_CMD_RUN,
            lambda event: self._switchPageHandler(
                event=event,
                notification=Notification.MAKE_VISIBLE))
        self._gconsole.Bind(
            gconsole.EVT_CMD_DONE,
            lambda event: self._switchPageHandler(
                event=event,
                notification=Notification.RAISE_WINDOW))
        self.RPackagesBook.SetSelection(0)
        KrigingSizer.Add(self.RPackagesBook, proportion=1, flag=wx.EXPAND)

        #    3. Output Parameters.
        OutputSizer = wx.StaticBoxSizer(
            wx.StaticBox(
                self,
                id=wx.ID_ANY,
                label=_("Output")),
            wx.HORIZONTAL)

        OutputParameters = wx.GridBagSizer(hgap=5, vgap=5)
        OutputParameters.Add(
            item=wx.StaticText(
                self, id=wx.ID_ANY,
                label=_("Name for the output raster map:")),
            flag=wx.ALIGN_CENTER_VERTICAL, pos=(0, 0))
        self.OutputMapName = gselect.Select(parent=self, id=wx.ID_ANY,
                                            type='raster',
                                            mapsets=[grass.gisenv()['MAPSET']])
        OutputParameters.Add(item=self.OutputMapName, flag=wx.EXPAND | wx.ALL,
                             pos=(0, 1))
        self.VarianceRasterCheckbox = wx.CheckBox(
            self, id=wx.ID_ANY, label=_("Export variance map as well: "))
        self.VarianceRasterCheckbox.SetValue(state=True)
        OutputParameters.Add(item=self.VarianceRasterCheckbox,
                             flag=wx.ALIGN_CENTER_VERTICAL,
                             pos=(1, 0))
        self.OutputVarianceMapName = gselect.Select(
            parent=self, id=wx.ID_ANY, type='raster',
            mapsets=[grass.gisenv()['MAPSET']])
        self.VarianceRasterCheckbox.Bind(
            wx.EVT_CHECKBOX, self.OnVarianceCBChecked)
        OutputParameters.Add(
            item=self.OutputVarianceMapName,
            flag=wx.EXPAND | wx.ALL,
            pos=(
                1,
                1))

        self.OverwriteCheckBox = wx.CheckBox(self, id=wx.ID_ANY, label=_(
            "Allow output files to overwrite existing files"))
        self.OverwriteCheckBox.SetValue(
            UserSettings.Get(
                group='cmd',
                key='overwrite',
                subkey='enabled'))
        OutputParameters.Add(item=self.OverwriteCheckBox,
                             pos=(2, 0), span=(1, 2))

        OutputParameters.AddGrowableCol(1)
        OutputSizer.Add(
            OutputParameters,
            proportion=0,
            flag=wx.EXPAND | wx.ALL,
            border=self.border)

        #    4. Run Button and Quit Button
        ButtonSizer = wx.BoxSizer(wx.HORIZONTAL)
        HelpButton = wx.Button(self, id=wx.ID_HELP)
        HelpButton.Bind(wx.EVT_BUTTON, self.OnHelpButton)
        QuitButton = wx.Button(self, id=wx.ID_EXIT)
        QuitButton.Bind(wx.EVT_BUTTON, self.OnCloseWindow)
        # no stock ID for Run button..
        self.RunButton = wx.Button(self, id=wx.ID_ANY, label=_("&Run"))
        self.RunButton.Bind(wx.EVT_BUTTON, self.OnRunButton)
        # disable it on loading the interface, as input map is not set
        self.RunButton.Enable(False)
        ButtonSizer.Add(
            HelpButton,
            proportion=0,
            flag=wx.ALIGN_LEFT | wx.ALL,
            border=self.border)
        ButtonSizer.Add(
            QuitButton,
            proportion=0,
            flag=wx.ALIGN_RIGHT | wx.ALL,
            border=self.border)
        ButtonSizer.Add(
            self.RunButton,
            proportion=0,
            flag=wx.ALIGN_RIGHT | wx.ALL,
            border=self.border)

        #    Main Sizer. Add each child sizer as soon as it is ready.
        Sizer = wx.BoxSizer(wx.VERTICAL)
        Sizer.Add(
            InputBoxSizer,
            proportion=0,
            flag=wx.EXPAND | wx.ALL,
            border=self.border)
        Sizer.Add(
            KrigingSizer,
            proportion=1,
            flag=wx.EXPAND | wx.ALL,
            border=self.border)
        Sizer.Add(
            OutputSizer,
            proportion=0,
            flag=wx.EXPAND | wx.ALL,
            border=self.border)
        Sizer.Add(
            ButtonSizer,
            proportion=0,
            flag=wx.ALIGN_RIGHT | wx.ALL,
            border=self.border)
        self.SetSizerAndFit(Sizer)

        # last action of __init__: update imput data list.
        # it's performed in the few seconds gap while user examines interface before clicking anything.
        #@TODO: implement a splashcreen IF the maps cause a noticeable lag [markus' suggestion]
        self.InputDataMap.GetElementList()

    def CreatePage(self, package, Rinstance, controller):
        """Creates the three notebook pages, one for each R package """
        for package in [
                "gstat"]:  # @TODO add here other packages when they will be implemented
            classobj = eval("RBook" + package + "Panel")
            setattr(
                self,
                "RBook" +
                package +
                "Panel",
                (classobj(
                    self,
                    id=wx.ID_ANY,
                    Rinstance=Rinstance,
                    controller=controller)))
            self.RPackagesBook.AddPage(
                page=getattr(
                    self,
                    "RBook" +
                    package +
                    "Panel"),
                text=package)

    def OnButtonRefresh(self, event):
        """Forces refresh of list of available layers. """
        self.InputDataMap.GetElementList()

    def OnCloseWindow(self, event):
        """Cancel button pressed"""
        self.parent.Close()
        event.Skip()

    def OnHelpButton(self, event):
        grass.run_command('g.manual', entry='v.krige')
        event.Skip()

    def OnInputMapChanged(self, event):
        """Refreshes list of columns."""
        MapName = event.GetString()
        self.InputDataColumn.InsertColumns(
            vector=MapName, layer=1, excludeKey=False,
            type=['integer', 'double precision'])

    def OnInputColumnChanged(self, event):
        """Fills output map name TextCtrl """
        MapName = self.InputDataMap.GetValue()
        enable = bool(self.InputDataColumn.GetValue())
        self.RunButton.Enable(enable)
        self.RBookgstatPanel.PlotButton.Enable(enable)

        if enable:
            self.OutputMapName.SetValue(MapName.split("@")[0] + "_kriging")
            self.OutputVarianceMapName.SetValue(
                MapName.split("@")[0] + "_kriging.var")
        else:
            self.OutputMapName.SetValue('')
            self.OutputVarianceMapName.SetValue('')

    def OnRunButton(self, event):
        """Execute R analysis. """
        #@FIXME: send data to main method instead of running it here.

        #-1: get the selected notebook page. The user shall know that [s]he can modify settings in all
        # pages, but only the selected one will be executed when Run is
        # pressed.
        SelectedPanel = self.RPackagesBook.GetCurrentPage()

        if self.RPackagesBook.GetPageText(
                self.RPackagesBook.GetSelection()) == 'Command output':
            self._gconsole.WriteError(
                "No parameters for running. Please select \"gstat\" tab, check parameters and re-run.")
            return False  # no break invoked by above function

        # mount command string as it would have been written on CLI
        command = [
            "v.krige",
            "input=" +
            self.InputDataMap.GetValue(),
            "column=" +
            self.InputDataColumn.GetValue(),
            "output=" +
            self.OutputMapName.GetValue(),
            "package=" +
            '%s' %
            self.RPackagesBook.GetPageText(
                self.RPackagesBook.GetSelection())]

        if not hasattr(
                SelectedPanel, 'VariogramCheckBox') or not SelectedPanel.VariogramCheckBox.IsChecked():
            command.append(
                "model=" + '%s' %
                SelectedPanel.ModelChoicebox.GetStringSelection().split(" ")[0])

        for i in ['Sill', 'Nugget', 'Range', 'Kappa']:
            if getattr(SelectedPanel, i + "ChextBox").IsChecked():
                command.append(
                    i.lower() +
                    "=" +
                    '%s' %
                    getattr(
                        SelectedPanel,
                        i +
                        'Ctrl').GetValue())

        if SelectedPanel.KrigingRadioBox.GetStringSelection() == "Block kriging":
            command.append(
                "block=" + '%s' %
                SelectedPanel.BlockSpinBox.GetValue())
        if self.OverwriteCheckBox.IsChecked():
            command.append("--overwrite")
        if self.VarianceRasterCheckbox.IsChecked():
            command.append(
                "output_var=" +
                self.OutputVarianceMapName.GetValue())

        # give it to the output console
        #@FIXME: it runs the command as a NEW instance. Reimports data, recalculates variogram fit..
        # otherwise I can use Controller() and mimic RunCmd behaviour.
        self._gconsole.RunCmd(command)

    def OnVarianceCBChecked(self, event):
        self.OutputVarianceMapName.Enable(event.IsChecked())

    def _switchPageHandler(self, event, notification):
        self._switchPage(notification=notification)
        event.Skip()

    def _switchPage(self, notification):
        """Manages @c 'output' notebook page according to event notification."""
        if notification == Notification.HIGHLIGHT:
            self.RPackagesBook.HighlightPageByName('output')
        if notification == Notification.MAKE_VISIBLE:
            self.RPackagesBook.SetSelectionByName('output')
        if notification == Notification.RAISE_WINDOW:
            self.RPackagesBook.SetSelectionByName('output')
            self.SetFocus()
            self.Raise()


class KrigingModule(wx.Frame):
    """Kriging module for GRASS GIS. Depends on R and its packages gstat and geoR. """

    def __init__(self, parent, Rinstance, controller, *args, **kwargs):
        wx.Frame.__init__(self, parent, *args, **kwargs)
        # setting properties and all widgettery
        self.SetTitle(_("Kriging Module"))
        self.SetIcon(
            wx.Icon(
                os.path.join(
                    globalvar.ICONDIR,
                    'grass_dialog.ico'),
                wx.BITMAP_TYPE_ICO))
        self.log = Log(self)
        self.CreateStatusBar()
        self.log.message(_("Ready."))

        self.Panel = KrigingPanel(self, Rinstance, controller)
        self.SetMinSize(self.GetBestSize())
        self.SetSize(self.GetBestSize())


class Log:
    """The log output is redirected to the status bar of the containing frame. """

    def __init__(self, parent):
        self.parent = parent

    def message(self, text_string):
        """Updates status bar """
        self.parent.SetStatusText(text_string.strip())


class RBookPanel(wx.Panel):
    """Generic notebook page with shared widgets and empty kriging functions. """

    def __init__(self, parent, *args, **kwargs):
        wx.Panel.__init__(self, parent, *args, **kwargs)

        self.parent = parent

        self.VariogramSizer = wx.StaticBoxSizer(
            wx.StaticBox(
                self,
                id=wx.ID_ANY,
                label=_("Variogram fitting")),
            wx.HORIZONTAL)
        self.LeftSizer = wx.BoxSizer(wx.VERTICAL)
        self.RightSizer = wx.BoxSizer(wx.VERTICAL)
        self.ParametersSizer = wx.GridBagSizer(vgap=5, hgap=5)

        self.VariogramSizer.Add(
            self.LeftSizer,
            proportion=0,
            flag=wx.EXPAND | wx.ALL,
            border=parent.border)
        self.VariogramSizer.Add(
            self.RightSizer,
            proportion=0,
            flag=wx.EXPAND | wx.ALL,
            border=parent.border)

        # left side of Variogram fitting. The checkboxes and spinctrls.
        # no stock ID for Run button..
        self.PlotButton = wx.Button(
            self, id=wx.ID_ANY, label=_("Plot/refresh variogram"))
        self.PlotButton.Bind(wx.EVT_BUTTON, self.OnPlotButton)
        # grey it out until a suitable layer is available
        self.PlotButton.Enable(False)
        self.LeftSizer.Add(
            self.PlotButton,
            proportion=0,
            flag=wx.ALL,
            border=parent.border)
        self.LeftSizer.Add(
            self.ParametersSizer,
            proportion=0,
            flag=wx.EXPAND | wx.ALL,
            border=parent.border)

        self.ParametersList = ["Sill", "Nugget", "Range", "Kappa"]
        MinValues = [0, 0, 1, 0.1]
        for n in self.ParametersList:
            setattr(
                self,
                n + "ChextBox",
                wx.CheckBox(
                    self,
                    id=self.ParametersList.index(n),
                    label=_(
                        n + ":")))
            # Kappa must be float
            if n == "Kappa":
                setattr(
                    self,
                    n + "Ctrl",
                    (wx.SpinCtrlDouble(
                        self,
                        id=wx.ID_ANY,
                        min=MinValues[
                            self.ParametersList.index(n)],
                        max=maxint,
                        inc=0.1,
                        initial=0.5)))
            else:
                setattr(
                    self,
                    n + "Ctrl",
                    (wx.SpinCtrl(
                        self,
                        id=wx.ID_ANY,
                        min=MinValues[
                            self.ParametersList.index(n)],
                        max=maxint)))
            getattr(self, n + "ChextBox").Bind(wx.EVT_CHECKBOX,
                                               self.UseValue,
                                               id=self.ParametersList.index(n))
            setattr(self, n + "Sizer", (wx.BoxSizer(wx.HORIZONTAL)))
            self.ParametersSizer.Add(getattr(self, n + "ChextBox"),
                                     flag=wx.ALIGN_CENTER_VERTICAL,
                                     pos=(self.ParametersList.index(n), 0))
            self.ParametersSizer.Add(getattr(self, n + "Ctrl"),
                                     flag=wx.EXPAND | wx.ALIGN_CENTER_VERTICAL,
                                     pos=(self.ParametersList.index(n), 1))

        # right side of the Variogram fitting. The plot area.
        #Plot = wx.StaticText(self, id= wx.ID_ANY, label = "Check Plot Variogram to interactively fit model.")
        #PlotPanel = wx.Panel(self)
        #self.PlotArea = plot.PlotCanvas(PlotPanel)
        #self.PlotArea.SetInitialSize(size = (250,250))
        #self.RightSizer.Add(PlotPanel, proportion=0, flag= wx.EXPAND|wx.ALL, border=parent.border)

        self.KrigingSizer = wx.StaticBoxSizer(
            wx.StaticBox(
                self,
                id=wx.ID_ANY,
                label=_("Kriging techniques")),
            wx.VERTICAL)

        # , "Universal kriging"] #@FIXME: i18n on the list?
        KrigingList = ["Ordinary kriging", "Block kriging"]
        self.KrigingRadioBox = wx.RadioBox(self,
                                           id=wx.ID_ANY,
                                           choices=KrigingList,
                                           majorDimension=1,
                                           style=wx.RA_SPECIFY_COLS)
        self.KrigingRadioBox.Bind(wx.EVT_RADIOBOX, self.HideBlockOptions)
        self.KrigingSizer.Add(
            self.KrigingRadioBox,
            proportion=0,
            flag=wx.EXPAND | wx.ALL,
            border=parent.border)

        # block kriging parameters. Size.
        BlockSizer = wx.BoxSizer(wx.HORIZONTAL)
        BlockLabel = wx.StaticText(self, id=wx.ID_ANY, label=_("Block size:"))
        self.BlockSpinBox = wx.SpinCtrl(self, id=wx.ID_ANY, min=1, max=maxint)
        # default choice is Ordinary kriging so block param is disabled
        self.BlockSpinBox.Enable(False)
        BlockSizer.Add(
            BlockLabel,
            flag=wx.ALIGN_CENTER_VERTICAL | wx.ALL,
            border=parent.border)
        BlockSizer.Add(
            self.BlockSpinBox,
            flag=wx.EXPAND | wx.ALIGN_CENTER_VERTICAL | wx.ALL,
            border=parent.border)
        self.KrigingSizer.Add(
            BlockSizer,
            flag=wx.EXPAND | wx.ALIGN_CENTER_VERTICAL | wx.ALL,
            border=parent.border)

        self.Sizer = wx.BoxSizer(wx.VERTICAL)
        self.Sizer.Add(
            self.VariogramSizer,
            proportion=0,
            flag=wx.EXPAND | wx.ALL,
            border=parent.border)
        self.Sizer.Add(
            self.KrigingSizer,
            proportion=0,
            flag=wx.EXPAND | wx.ALL,
            border=parent.border)

    def HideBlockOptions(self, event):
        self.BlockSpinBox.Enable(event.GetInt() == 1)

    def OnPlotButton(self, event):
        """Plots variogram with current options. """
        pass

    def UseValue(self, event):
        """Enables/Disables the SpinCtrl in respect of the checkbox. """
        n = self.ParametersList[event.GetId()]
        getattr(self, n + "Ctrl").Enable(event.IsChecked())


class RBookgstatPanel(RBookPanel):
    """Subclass of RBookPanel, with specific gstat options and kriging functions. """

    def __init__(self, parent, Rinstance, controller, *args, **kwargs):
        RBookPanel.__init__(self, parent, *args, **kwargs)

        # assigns Rinstance, that comes from the GUI call of v.krige.py.
        robjects = Rinstance
        self.controller = controller

        if robjects.r.require('automap')[0]:
            self.VariogramCheckBox = wx.CheckBox(
                self, id=wx.ID_ANY, label=_("Auto-fit variogram"))
            self.LeftSizer.Insert(
                0,
                self.VariogramCheckBox,
                proportion=0,
                flag=wx.EXPAND | wx.ALIGN_CENTER_VERTICAL | wx.ALL,
                border=4)
            self.SetSizerAndFit(self.Sizer)
            self.VariogramCheckBox.Bind(wx.EVT_CHECKBOX, self.HideOptions)
            self.VariogramCheckBox.SetValue(state=True)  # check it by default

        # Get list of available models. Show long name but use short one
        ModelFactor = robjects.r.vgm()
        ModelList = robjects.r.levels(ModelFactor[1])
        self.ModelListShort = robjects.r.levels(ModelFactor[0])
        #@FIXME: no other way to let the Python pick it up..
        # and this is te wrong place where to load this list. should be at the
        # very beginning.
        self.ModelChoicebox = wx.Choice(self, id=wx.ID_ANY, choices=ModelList)

        # disable model parameters' widgets by default
        for n in ["Sill", "Nugget", "Range", "Kappa"]:
            getattr(self, n + "Ctrl").Enable(False)
        self.ModelChoicebox.Enable(False)

        VariogramSubSizer = wx.BoxSizer(wx.HORIZONTAL)
        VariogramSubSizer.Add(item=wx.StaticText(self,
                                                 id=wx.ID_ANY,
                                                 label=_("Model: ")),
                              flag=wx.ALIGN_CENTER_VERTICAL | wx.ALL,
                              border=4)
        VariogramSubSizer.Add(item=self.ModelChoicebox,
                              flag=wx.ALIGN_CENTER_VERTICAL | wx.ALL,
                              border=4)

        self.LeftSizer.Insert(2, item=VariogramSubSizer)

        self.SetSizerAndFit(self.Sizer)

    def HideOptions(self, event):
        self.ModelChoicebox.Enable(not event.IsChecked())
        for n in ["Sill", "Nugget", "Range", "Kappa"]:
            if not event.IsChecked():
                getattr(self, n + "Ctrl").Enable(True)
                getattr(self, n + "ChextBox").SetValue(True)
                # grey it out keeping it checked.. improvable
                getattr(self, n + "ChextBox").Enable(False)
            else:
                getattr(self, n + "Ctrl").Enable(False)
                getattr(self, n + "ChextBox").SetValue(False)
                getattr(self, n + "ChextBox").Enable(True)
        #@FIXME: was for n in self.ParametersSizer.GetChildren(): n.Enable(False) but doesn't work

    def OnPlotButton(self, event):
        """Plots variogram with current options. """
        # BIG WARNING: smell of code duplication. Fix this asap. emminchia!
        # controller = Controller() # sed, if needed,
        #controller = self.controller
        map = self.parent.InputDataMap.GetValue()
        column = self.parent.InputDataColumn.GetValue()

        # import data or pick them up
        if self.controller.InputData is None:
            self.controller.InputData = self.controller.ImportMap(
                map=map, column=column)
        # fit the variogram or pick it up
        #~ Formula = self.controller.ComposeFormula(column = column,
            #~ isblock = self.KrigingRadioBox.GetStringSelection() == "Block kriging")
        if hasattr(
                self, 'VariogramCheckBox') and self.VariogramCheckBox.IsChecked():
            self.model = ''
            for each in ("Sill", "Nugget", "Range", "Kappa"):
                if getattr(self, each + 'ChextBox').IsChecked():
                    setattr(
                        self, each.lower(), getattr(
                            self, each + "Ctrl").GetValue())
                else:
                    setattr(self, each.lower(), robjects.r('''NA'''))

        else:
            self.model = self.ModelListShort[
                self.ModelChoicebox.GetSelection()]
            for each in ("Sill", "Nugget", "Range", "Kappa"):
                # @FIXME will be removed when chextboxes will be frozen
                if getattr(self, each + 'ChextBox').IsChecked():
                    setattr(
                        self, each.lower(), getattr(
                            self, each + "Ctrl").GetValue())

        isblock = self.KrigingRadioBox.GetStringSelection() == "Block kriging"
        if isblock is not '':
            self.predictor = 'x+y'
        else:
            self.predictor = '1'

        self.controller.Variogram = self.controller.FitVariogram(
            robjects.Formula(str(column) + "~" + self.predictor),
            self.controller.InputData, model=self.model, sill=self.sill,
            nugget=self.nugget, range=self.range, kappa=self.kappa)

        ''' Fill parameters with autofitted values '''
        if hasattr(
                self, 'VariogramCheckBox') and self.VariogramCheckBox.IsChecked():
            for i in range(len(self.ModelListShort)):
                if self.ModelListShort[
                        i] == self.controller.Variogram['model']:
                    self.ModelChoicebox.SetSelection(i)
                    break
            if not getattr(self, 'SillChextBox').IsChecked():
                self.sill = self.controller.Variogram['variogrammodel'][1][1]
                self.SillCtrl.SetValue(self.sill)
            if not getattr(self, 'NuggetChextBox').IsChecked():
                self.nugget = self.controller.Variogram['variogrammodel'][1][0]
                self.NuggetCtrl.SetValue(self.nugget)
            if not getattr(self, 'RangeChextBox').IsChecked():
                self.range = self.controller.Variogram['variogrammodel'][2][1]
                self.RangeCtrl.SetValue(self.range)
            if not getattr(self, 'KappaChextBox').IsChecked():
                self.kappa = self.controller.Variogram['variogrammodel'][3][1]
                self.KappaCtrl.SetValue(self.kappa)

        # use R plot function, in a separate window.
        thread.start_new_thread(self.plot, ())

    def plot(self):
        # robjects.r.X11()
        # robjects.r.png("variogram.png")
        textplot = robjects.r.plot(self.controller.Variogram['datavariogram'],
                                   self.controller.Variogram['variogrammodel'])
        print textplot
        self.refresh()
        # robjects.r['dev.off']()

    def refresh(self):
        while True:
            rinterface.process_revents()
            time.sleep(0.2)


class RBookgeoRPanel(RBookPanel):
    """Subclass of RBookPanel, with specific geoR options and kriging functions. """

    def __init__(self, parent, *args, **kwargs):
        RBookPanel.__init__(self, parent, *args, **kwargs)
        #@TODO: change these two lines as soon as geoR f(x)s are integrated.
        for n in self.GetChildren():
            n.Hide()
        self.Sizer.Add(
            wx.StaticText(
                self,
                id=wx.ID_ANY,
                label=_("Work in progress! No functionality provided.")))
        self.SetSizerAndFit(self.Sizer)