vkrige.py 25 KB

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  1. """
  2. MODULE: vkrige
  3. AUTHOR(S): Anne Ghisla <a.ghisla AT gmail.com>
  4. PURPOSE: Dedicated GUI for v.krige script.
  5. DEPENDS: R 2.x, packages gstat, maptools and spgrass6, optional: automap
  6. COPYRIGHT: (C) 2009 by the GRASS Development Team
  7. This program is free software under the GNU General Public
  8. License (>=v2). Read the file COPYING that comes with GRASS
  9. for details.
  10. """
  11. #@TODO move here imports related to wxGUI
  12. ### generic imports
  13. import os, sys
  14. from tempfile import gettempdir
  15. import time
  16. import thread
  17. ## i18N
  18. import gettext
  19. gettext.install('grasswxpy', os.path.join(os.getenv("GISBASE"), 'locale'), unicode = True)
  20. ### dependencies to be checked once, as they are quite time-consuming. cfr. grass.parser.
  21. # GRASS binding
  22. try:
  23. import grass.script as grass
  24. except ImportError:
  25. sys.exit(_("No GRASS-python library found."))
  26. ### wxGUI imports
  27. GUIModulesPath = os.path.join(os.getenv("GISBASE"), "etc", "gui", "wxpython")
  28. sys.path.append(GUIModulesPath)
  29. from core import globalvar
  30. from gui_core import gselect
  31. from gui_core import goutput
  32. from core.settings import UserSettings
  33. from gui_core.widgets import GNotebook
  34. #import help
  35. import wx
  36. #import wx.lib.plot as plot # for plotting the variogram.
  37. # global variables
  38. maxint = 1e6 # instead of sys.maxint, not working with SpinCtrl on 64bit [reported by Bob Moskovitz]
  39. #@TODO move away functions not regarding the GUI
  40. class KrigingPanel(wx.Panel):
  41. """ Main panel. Contains all widgets except Menus and Statusbar. """
  42. def __init__(self, parent, Rinstance, controller, *args, **kwargs):
  43. wx.Panel.__init__(self, parent, *args, **kwargs)
  44. self.parent = parent
  45. self.border = 4
  46. # 1. Input data
  47. InputBoxSizer = wx.StaticBoxSizer(wx.StaticBox(self, id = wx.ID_ANY, label = _("Input Data")),
  48. orient = wx.HORIZONTAL)
  49. flexSizer = wx.FlexGridSizer(cols = 3, hgap = 5, vgap = 5)
  50. flexSizer.AddGrowableCol(1)
  51. flexSizer.Add(item = wx.StaticText(self, id = wx.ID_ANY, label = _("Point dataset:")),
  52. flag = wx.ALIGN_CENTER_VERTICAL)
  53. self.InputDataMap = gselect.VectorSelect(parent = self,
  54. ftype = 'points',
  55. updateOnPopup = False)
  56. self.InputDataMap.SetFocus()
  57. flexSizer.Add(item = self.InputDataMap, flag = wx.ALIGN_CENTER_VERTICAL)
  58. RefreshButton = wx.Button(self, id = wx.ID_REFRESH)
  59. RefreshButton.Bind(wx.EVT_BUTTON, self.OnButtonRefresh)
  60. flexSizer.Add(item = RefreshButton, flag = wx.ALIGN_CENTER_VERTICAL)
  61. flexSizer.Add(item = wx.StaticText(self, id = wx.ID_ANY, label = _("Numeric column:")),
  62. flag = wx.ALIGN_CENTER_VERTICAL)
  63. self.InputDataColumn = gselect.ColumnSelect(self, id = wx.ID_ANY)
  64. self.InputDataColumn.SetSelection(0)
  65. flexSizer.Add(item = self.InputDataColumn)
  66. self.InputDataMap.GetChildren()[0].Bind(wx.EVT_TEXT, self.OnInputDataChanged)
  67. InputBoxSizer.Add(item = flexSizer)
  68. # 2. Kriging. In book pages one for each R package. Includes variogram fit.
  69. KrigingSizer = wx.StaticBoxSizer(wx.StaticBox(self, id = wx.ID_ANY, label = _("Kriging")), wx.HORIZONTAL)
  70. self.RPackagesBook = GNotebook(parent = self, style = globalvar.FNPageDStyle)
  71. for Rpackage in ["gstat"]: # , "geoR"]: #@TODO: enable it if/when it'll be implemented.
  72. self.CreatePage(package = Rpackage, Rinstance = Rinstance, controller = controller)
  73. ## Command output. From menuform module, cmdPanel class
  74. self.goutput = goutput.GMConsole(parent = self, frame = self.parent, margin = False,
  75. notebook = self.RPackagesBook)
  76. self.goutputId = self.RPackagesBook.GetPageCount()
  77. self.outpage = self.RPackagesBook.AddPage(page = self.goutput, text = _("Command output"), name = 'output')
  78. self.RPackagesBook.SetSelection(0)
  79. KrigingSizer.Add(self.RPackagesBook, proportion = 1, flag = wx.EXPAND)
  80. # 3. Output Parameters.
  81. OutputSizer = wx.StaticBoxSizer(wx.StaticBox(self, id = wx.ID_ANY, label = _("Output")), wx.HORIZONTAL)
  82. OutputParameters = wx.GridBagSizer(hgap = 5, vgap = 5)
  83. OutputParameters.AddGrowableCol(1)
  84. OutputParameters.Add(item = wx.StaticText(self, id = wx.ID_ANY, label = _("Name for the output raster map:")),
  85. flag = wx.ALIGN_CENTER_VERTICAL,
  86. pos = (0, 0))
  87. self.OutputMapName = gselect.Select(parent = self, id = wx.ID_ANY,
  88. type = 'raster',
  89. mapsets = [grass.gisenv()['MAPSET']])
  90. OutputParameters.Add(item = self.OutputMapName, flag = wx.EXPAND | wx.ALL,
  91. pos = (0, 1))
  92. self.VarianceRasterCheckbox = wx.CheckBox(self, id = wx.ID_ANY, label = _("Export variance map as well: "))
  93. self.VarianceRasterCheckbox.SetValue(state = True)
  94. OutputParameters.Add(item = self.VarianceRasterCheckbox,
  95. flag = wx.ALIGN_CENTER_VERTICAL,
  96. pos = (1, 0))
  97. self.OutputVarianceMapName = gselect.Select(parent = self, id = wx.ID_ANY,
  98. type = 'raster',
  99. mapsets = [grass.gisenv()['MAPSET']])
  100. self.VarianceRasterCheckbox.Bind(wx.EVT_CHECKBOX, self.OnVarianceCBChecked)
  101. OutputParameters.Add(item = self.OutputVarianceMapName, flag = wx.EXPAND | wx.ALL,
  102. pos = (1, 1))
  103. self.OverwriteCheckBox = wx.CheckBox(self, id = wx.ID_ANY,
  104. label = _("Allow output files to overwrite existing files"))
  105. self.OverwriteCheckBox.SetValue(UserSettings.Get(group='cmd', key='overwrite', subkey='enabled'))
  106. OutputParameters.Add(item = self.OverwriteCheckBox,
  107. pos = (2, 0), span = (1, 2))
  108. OutputSizer.Add(OutputParameters, proportion = 0, flag = wx.EXPAND | wx.ALL, border = self.border)
  109. # 4. Run Button and Quit Button
  110. ButtonSizer = wx.BoxSizer(wx.HORIZONTAL)
  111. HelpButton = wx.Button(self, id = wx.ID_HELP)
  112. HelpButton.Bind(wx.EVT_BUTTON, self.OnHelpButton)
  113. QuitButton = wx.Button(self, id = wx.ID_EXIT)
  114. QuitButton.Bind(wx.EVT_BUTTON, self.OnCloseWindow)
  115. self.RunButton = wx.Button(self, id = wx.ID_ANY, label = _("&Run")) # no stock ID for Run button..
  116. self.RunButton.Bind(wx.EVT_BUTTON, self.OnRunButton)
  117. self.RunButton.Enable(False) # disable it on loading the interface, as input map is not set
  118. ButtonSizer.Add(HelpButton, proportion = 0, flag = wx.ALIGN_LEFT | wx.ALL, border = self.border)
  119. ButtonSizer.Add(QuitButton, proportion = 0, flag = wx.ALIGN_RIGHT | wx.ALL, border = self.border)
  120. ButtonSizer.Add(self.RunButton, proportion = 0, flag = wx.ALIGN_RIGHT | wx.ALL, border = self.border)
  121. # Main Sizer. Add each child sizer as soon as it is ready.
  122. Sizer = wx.BoxSizer(wx.VERTICAL)
  123. Sizer.Add(InputBoxSizer, proportion = 0, flag = wx.EXPAND | wx.ALL, border = self.border)
  124. Sizer.Add(KrigingSizer, proportion = 1, flag = wx.EXPAND | wx.ALL, border = self.border)
  125. Sizer.Add(OutputSizer, proportion = 0, flag = wx.EXPAND | wx.ALL, border = self.border)
  126. Sizer.Add(ButtonSizer, proportion = 0, flag = wx.ALIGN_RIGHT | wx.ALL, border = self.border)
  127. self.SetSizerAndFit(Sizer)
  128. # last action of __init__: update imput data list.
  129. # it's performed in the few seconds gap while user examines interface before clicking anything.
  130. #@TODO: implement a splashcreen IF the maps cause a noticeable lag [markus' suggestion]
  131. self.InputDataMap.GetElementList()
  132. def CreatePage(self, package, Rinstance, controller):
  133. """ Creates the three notebook pages, one for each R package """
  134. for package in ["gstat"]:
  135. classobj = eval("RBook"+package+"Panel")
  136. setattr(self, "RBook"+package+"Panel", (classobj(self,
  137. id = wx.ID_ANY,
  138. Rinstance = Rinstance,
  139. controller = controller)))
  140. self.RPackagesBook.AddPage(page = getattr(self, "RBook"+package+"Panel"), text = package)
  141. def OnButtonRefresh(self, event):
  142. """ Forces refresh of list of available layers. """
  143. self.InputDataMap.GetElementList()
  144. def OnCloseWindow(self, event):
  145. """ Cancel button pressed"""
  146. self.parent.Close()
  147. event.Skip()
  148. def OnHelpButton(self, event):
  149. # file = os.path.join(os.getenv("GISBASE"), "docs", "html", "v.krige.html")
  150. # file = os.path.join(os.path.curdir, "description.html")
  151. # @TODO fix HelpWindow
  152. # helpFrame = help.HelpWindow(parent=self, id=wx.ID_ANY,
  153. # title=_("GRASS - Help page for v.krige"),
  154. # size=(640, 480),
  155. # file=file)
  156. # helpFrame.Show(True)
  157. grass.run_command('g.manual', entry = 'v.krige')
  158. event.Skip()
  159. def OnInputDataChanged(self, event):
  160. """ Refreshes list of columns and fills output map name TextCtrl """
  161. MapName = event.GetString()
  162. self.InputDataColumn.InsertColumns(vector = MapName,
  163. layer = 1, excludeKey = True,
  164. type = ['integer', 'double precision'])
  165. self.InputDataColumn.SetSelection(0)
  166. self.RunButton.Enable(self.InputDataColumn.GetSelection() is not -1)
  167. self.RBookgstatPanel.PlotButton.Enable(self.InputDataColumn.GetSelection() is not -1)
  168. if self.InputDataColumn.GetSelection() is not -1:
  169. self.OutputMapName.SetValue(MapName.split("@")[0]+"_kriging")
  170. self.OutputVarianceMapName.SetValue(MapName.split("@")[0]+"_kriging_var")
  171. else:
  172. self.OutputMapName.SetValue('')
  173. self.OutputVarianceMapName.SetValue('')
  174. def OnRunButton(self,event):
  175. """ Execute R analysis. """
  176. #@FIXME: send data to main method instead of running it here.
  177. #-1: get the selected notebook page. The user shall know that [s]he can modify settings in all
  178. # pages, but only the selected one will be executed when Run is pressed.
  179. SelectedPanel = self.RPackagesBook.GetCurrentPage()
  180. if self.RPackagesBook.GetPageText(self.RPackagesBook.GetSelection()) == 'Command output':
  181. self.goutput.WriteError("No parameters for running. Please select \"gstat\" tab, check parameters and re-run.")
  182. return False # no break invoked by above function
  183. # mount command string as it would have been written on CLI
  184. command = ["v.krige", "input=" + self.InputDataMap.GetValue(),
  185. "column=" + self.InputDataColumn.GetValue(),
  186. "output=" + self.OutputMapName.GetValue(),
  187. "package=" + '%s' % self.RPackagesBook.GetPageText(self.RPackagesBook.GetSelection())]
  188. if not hasattr(SelectedPanel, 'VariogramCheckBox') or not SelectedPanel.VariogramCheckBox.IsChecked():
  189. command.append("model=" + '%s' % SelectedPanel.ModelChoicebox.GetStringSelection().split(" ")[0])
  190. for i in ['Sill', 'Nugget', 'Range']:
  191. if getattr(SelectedPanel, i+"ChextBox").IsChecked():
  192. command.append(i.lower() + "=" + '%s' % getattr(SelectedPanel, i+'Ctrl').GetValue())
  193. if SelectedPanel.KrigingRadioBox.GetStringSelection() == "Block kriging":
  194. command.append("block=" + '%s' % SelectedPanel.BlockSpinBox.GetValue())
  195. if self.OverwriteCheckBox.IsChecked():
  196. command.append("--overwrite")
  197. if self.VarianceRasterCheckbox.IsChecked():
  198. command.append("output_var=" + self.OutputVarianceMapName.GetValue())
  199. # give it to the output console
  200. #@FIXME: it runs the command as a NEW instance. Reimports data, recalculates variogram fit..
  201. #otherwise I can use Controller() and mimic RunCmd behaviour.
  202. self.goutput.RunCmd(command, switchPage = True)
  203. def OnVarianceCBChecked(self, event):
  204. self.OutputVarianceMapName.Enable(event.IsChecked())
  205. class KrigingModule(wx.Frame):
  206. """ Kriging module for GRASS GIS. Depends on R and its packages gstat and geoR. """
  207. def __init__(self, parent, Rinstance, controller, *args, **kwargs):
  208. wx.Frame.__init__(self, parent, *args, **kwargs)
  209. # setting properties and all widgettery
  210. self.SetTitle(_("Kriging Module"))
  211. self.SetIcon(wx.Icon(os.path.join(globalvar.ETCICONDIR, 'grass_dialog.ico'), wx.BITMAP_TYPE_ICO))
  212. self.log = Log(self)
  213. self.CreateStatusBar()
  214. self.log.message(_("Ready."))
  215. self.Panel = KrigingPanel(self, Rinstance, controller)
  216. self.SetMinSize(self.GetBestSize())
  217. self.SetSize(self.GetBestSize())
  218. class Log:
  219. """ The log output is redirected to the status bar of the containing frame. """
  220. def __init__(self, parent):
  221. self.parent = parent
  222. def message(self, text_string):
  223. """ Updates status bar """
  224. self.parent.SetStatusText(text_string.strip())
  225. class RBookPanel(wx.Panel):
  226. """ Generic notebook page with shared widgets and empty kriging functions. """
  227. def __init__(self, parent, *args, **kwargs):
  228. wx.Panel.__init__(self, parent, *args, **kwargs)
  229. self.parent = parent
  230. self.VariogramSizer = wx.StaticBoxSizer(wx.StaticBox(self,
  231. id = wx.ID_ANY,
  232. label = _("Variogram fitting")),
  233. wx.HORIZONTAL)
  234. self.LeftSizer = wx.BoxSizer(wx.VERTICAL)
  235. self.RightSizer = wx.BoxSizer(wx.VERTICAL)
  236. self.ParametersSizer = wx.GridBagSizer(vgap = 5, hgap = 5)
  237. self.VariogramSizer.Add(self.LeftSizer, proportion = 0, flag = wx.EXPAND | wx.ALL, border = parent.border)
  238. self.VariogramSizer.Add(self.RightSizer, proportion = 0, flag = wx.EXPAND | wx.ALL, border = parent.border)
  239. # left side of Variogram fitting. The checkboxes and spinctrls.
  240. self.PlotButton = wx.Button(self, id = wx.ID_ANY, label = _("Plot/refresh variogram")) # no stock ID for Run button..
  241. self.PlotButton.Bind(wx.EVT_BUTTON, self.OnPlotButton)
  242. self.PlotButton.Enable(False) # grey it out until a suitable layer is available
  243. self.LeftSizer.Add(self.PlotButton, proportion = 0, flag = wx.ALL, border = parent.border)
  244. self.LeftSizer.Add(self.ParametersSizer, proportion = 0, flag = wx.EXPAND | wx.ALL, border = parent.border)
  245. self.ParametersList = ["Sill", "Nugget", "Range"]
  246. MinValues = [0,0,1]
  247. for n in self.ParametersList:
  248. setattr(self, n+"ChextBox", wx.CheckBox(self,
  249. id = self.ParametersList.index(n),
  250. label = _(n + ":")))
  251. setattr(self, n+"Ctrl", (wx.SpinCtrl(self,
  252. id = wx.ID_ANY,
  253. min = MinValues[self.ParametersList.index(n)],
  254. max = maxint)))
  255. getattr(self, n+"ChextBox").Bind(wx.EVT_CHECKBOX,
  256. self.UseValue,
  257. id = self.ParametersList.index(n))
  258. setattr(self, n+"Sizer", (wx.BoxSizer(wx.HORIZONTAL)))
  259. self.ParametersSizer.Add(getattr(self, n+"ChextBox"),
  260. flag = wx.ALIGN_CENTER_VERTICAL,
  261. pos = (self.ParametersList.index(n),0))
  262. self.ParametersSizer.Add(getattr(self, n+"Ctrl"),
  263. flag = wx.EXPAND | wx.ALIGN_CENTER_VERTICAL,
  264. pos = (self.ParametersList.index(n),1))
  265. # right side of the Variogram fitting. The plot area.
  266. #Plot = wx.StaticText(self, id= wx.ID_ANY, label = "Check Plot Variogram to interactively fit model.")
  267. #PlotPanel = wx.Panel(self)
  268. #self.PlotArea = plot.PlotCanvas(PlotPanel)
  269. #self.PlotArea.SetInitialSize(size = (250,250))
  270. #self.RightSizer.Add(PlotPanel, proportion=0, flag= wx.EXPAND|wx.ALL, border=parent.border)
  271. self.KrigingSizer = wx.StaticBoxSizer(wx.StaticBox(self,
  272. id = wx.ID_ANY,
  273. label = _("Kriging techniques")),
  274. wx.VERTICAL)
  275. KrigingList = ["Ordinary kriging", "Block kriging"]#, "Universal kriging"] #@FIXME: i18n on the list?
  276. self.KrigingRadioBox = wx.RadioBox(self,
  277. id = wx.ID_ANY,
  278. choices = KrigingList,
  279. majorDimension = 1,
  280. style = wx.RA_SPECIFY_COLS)
  281. self.KrigingRadioBox.Bind(wx.EVT_RADIOBOX, self.HideBlockOptions)
  282. self.KrigingSizer.Add(self.KrigingRadioBox, proportion = 0, flag = wx.EXPAND | wx.ALL, border = parent.border)
  283. # block kriging parameters. Size.
  284. BlockSizer = wx.BoxSizer(wx.HORIZONTAL)
  285. BlockLabel = wx.StaticText(self, id = wx.ID_ANY, label = _("Block size:"))
  286. self.BlockSpinBox = wx.SpinCtrl(self, id = wx.ID_ANY, min = 1, max = maxint)
  287. self.BlockSpinBox.Enable(False) # default choice is Ordinary kriging so block param is disabled
  288. BlockSizer.Add(BlockLabel, flag = wx.ALIGN_CENTER_VERTICAL | wx.ALL, border = parent.border)
  289. BlockSizer.Add(self.BlockSpinBox, flag = wx.EXPAND | wx.ALIGN_CENTER_VERTICAL | wx.ALL, border = parent.border)
  290. self.KrigingSizer.Add(BlockSizer, flag = wx.EXPAND | wx.ALIGN_CENTER_VERTICAL | wx.ALL, border = parent.border)
  291. self.Sizer = wx.BoxSizer(wx.VERTICAL)
  292. self.Sizer.Add(self.VariogramSizer, proportion = 0, flag = wx.EXPAND | wx.ALL, border = parent.border)
  293. self.Sizer.Add(self.KrigingSizer, proportion = 0, flag = wx.EXPAND | wx.ALL, border = parent.border)
  294. def HideBlockOptions(self, event):
  295. self.BlockSpinBox.Enable(event.GetInt() == 1)
  296. def OnPlotButton(self,event):
  297. """ Plots variogram with current options. """
  298. pass
  299. def UseValue(self, event):
  300. """ Enables/Disables the SpinCtrl in respect of the checkbox. """
  301. n = self.ParametersList[event.GetId()]
  302. getattr(self, n+"Ctrl").Enable(event.IsChecked())
  303. class RBookgstatPanel(RBookPanel):
  304. """ Subclass of RBookPanel, with specific gstat options and kriging functions. """
  305. def __init__(self, parent, Rinstance, controller, *args, **kwargs):
  306. RBookPanel.__init__(self, parent, *args, **kwargs)
  307. # assigns Rinstance, that comes from the GUI call of v.krige.py.
  308. robjects = Rinstance
  309. self.controller = controller
  310. if robjects.r.require('automap')[0]:
  311. self.VariogramCheckBox = wx.CheckBox(self, id = wx.ID_ANY, label = _("Auto-fit variogram"))
  312. self.LeftSizer.Insert(0,
  313. self.VariogramCheckBox,
  314. proportion = 0,
  315. flag = wx.EXPAND | wx.ALIGN_CENTER_VERTICAL | wx.ALL,
  316. border = 4)
  317. self.SetSizerAndFit(self.Sizer)
  318. self.VariogramCheckBox.Bind(wx.EVT_CHECKBOX, self.HideOptions)
  319. self.VariogramCheckBox.SetValue(state = True) # check it by default
  320. ModelFactor = robjects.r.vgm().rx('long')
  321. ModelList = robjects.r.levels(ModelFactor[0])
  322. #@FIXME: no other way to let the Python pick it up..
  323. # and this is te wrong place where to load this list. should be at the very beginning.
  324. self.ModelChoicebox = wx.Choice(self, id = wx.ID_ANY, choices = ModelList)
  325. # disable model parameters' widgets by default
  326. for n in ["Sill", "Nugget", "Range"]:
  327. getattr(self, n+"Ctrl").Enable(False)
  328. self.ModelChoicebox.Enable(False)
  329. VariogramSubSizer = wx.BoxSizer(wx.HORIZONTAL)
  330. VariogramSubSizer.Add(item = wx.StaticText(self,
  331. id = wx.ID_ANY,
  332. label = _("Model: ")),
  333. flag = wx.ALIGN_CENTER_VERTICAL | wx.ALL,
  334. border = 4)
  335. VariogramSubSizer.Add(item = self.ModelChoicebox,
  336. flag = wx.ALIGN_CENTER_VERTICAL | wx.ALL,
  337. border = 4)
  338. self.LeftSizer.Insert(2, item = VariogramSubSizer)
  339. self.SetSizerAndFit(self.Sizer)
  340. def HideOptions(self, event):
  341. self.ModelChoicebox.Enable(not event.IsChecked())
  342. for n in ["Sill", "Nugget", "Range"]:
  343. if not event.IsChecked():
  344. getattr(self, n+"Ctrl").Enable(True)
  345. getattr(self, n+ "ChextBox").SetValue(True)
  346. getattr(self, n+ "ChextBox").Enable(False) # grey it out keeping it checked.. improvable
  347. else:
  348. getattr(self, n+"Ctrl").Enable(False)
  349. getattr(self, n+ "ChextBox").SetValue(False)
  350. getattr(self, n+ "ChextBox").Enable(True)
  351. #@FIXME: was for n in self.ParametersSizer.GetChildren(): n.Enable(False) but doesn't work
  352. def OnPlotButton(self,event):
  353. """ Plots variogram with current options. """
  354. ## BIG WARNING: smell of code duplication. Fix this asap. emminchia!
  355. #controller = Controller() # sed, if needed,
  356. #controller = self.controller
  357. map = self.parent.InputDataMap.GetValue()
  358. column = self.parent.InputDataColumn.GetValue()
  359. # import data or pick them up
  360. if globals()["InputData"] is None:
  361. globals()["InputData"] = controller.ImportMap(map = map,
  362. column = column)
  363. # fit the variogram or pick it up
  364. Formula = controller.ComposeFormula(column = column,
  365. isblock = self.KrigingRadioBox.GetStringSelection() == "Block kriging",
  366. inputdata = globals()['InputData'])
  367. #if globals()["Variogram"] is None:
  368. if hasattr(self, 'VariogramCheckBox') and self.VariogramCheckBox.IsChecked():
  369. self.model = ''
  370. for each in ("Sill","Nugget","Range"):
  371. if getattr(self, each+'ChextBox').IsChecked():
  372. setattr(self, each.lower(), getattr(self, each+"Ctrl").GetValue())
  373. else:
  374. setattr(self, each.lower(), robjects.r('''NA'''))
  375. else:
  376. self.model = self.ModelChoicebox.GetStringSelection().split(" ")[0]
  377. for each in ("Sill","Nugget","Range"):
  378. if getattr(self, each+'ChextBox').IsChecked(): #@FIXME will be removed when chextboxes will be frozen
  379. setattr(self, each.lower(), getattr(self, each+"Ctrl").GetValue())
  380. globals()["Variogram"] = controller.FitVariogram(Formula,
  381. InputData,
  382. model = self.model,
  383. sill = self.sill,
  384. nugget = self.nugget,
  385. range = self.range)
  386. # use R plot function, in a separate window.
  387. thread.start_new_thread(self.plot, ())
  388. def plot(self):
  389. #robjects.r.X11()
  390. #robjects.r.png("variogram.png")
  391. textplot = robjects.r.plot(Variogram['datavariogram'], Variogram['variogrammodel'])
  392. print textplot
  393. self.refresh()
  394. #robjects.r['dev.off']()
  395. def refresh(self):
  396. while True:
  397. rinterface.process_revents()
  398. time.sleep(0.1)
  399. class RBookgeoRPanel(RBookPanel):
  400. """ Subclass of RBookPanel, with specific geoR options and kriging functions. """
  401. def __init__(self, parent, *args, **kwargs):
  402. RBookPanel.__init__(self, parent, *args, **kwargs)
  403. #@TODO: change these two lines as soon as geoR f(x)s are integrated.
  404. for n in self.GetChildren():
  405. n.Hide()
  406. self.Sizer.Add(wx.StaticText(self, id = wx.ID_ANY, label = _("Work in progress! No functionality provided.")))
  407. self.SetSizerAndFit(self.Sizer)