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- """
- This module provides the functionality to create the temporal
- SQL database and to establish a connection to the database.
- Usage:
- .. code-block:: python
- >>> import grass.temporal as tgis
- >>> # Create the temporal database
- >>> tgis.init()
- >>> # Establish a database connection
- >>> dbif, connection_state_changed = tgis.init_dbif(None)
- >>> dbif.connect()
- >>> # Execute a SQL statement
- >>> dbif.execute_transaction("SELECT datetime(0, 'unixepoch', 'localtime');")
- >>> # Mogrify an SQL statement
- >>> dbif.mogrify_sql_statement(["SELECT name from raster_base where name = ?",
- ... ("precipitation",)])
- "SELECT name from raster_base where name = 'precipitation'"
- >>> dbif.close()
- (C) 2011-2014 by the GRASS Development Team
- This program is free software under the GNU General Public
- License (>=v2). Read the file COPYING that comes with GRASS
- for details.
- :author: Soeren Gebbert
- """
- # import traceback
- import os
- import sys
- import grass.script as gscript
- from .c_libraries_interface import CLibrariesInterface
- from grass.pygrass import messages
- from grass.script.utils import decode
- # Import all supported database backends
- # Ignore import errors since they are checked later
- try:
- import sqlite3
- except ImportError:
- pass
- # Postgresql is optional, existence is checked when needed
- try:
- import psycopg2
- import psycopg2.extras
- except:
- pass
- import atexit
- from datetime import datetime
- if sys.version_info.major >= 3:
- long = int
- ###############################################################################
- def profile_function(func):
- """Profiling function provided by the temporal framework"""
- do_profiling = os.getenv("GRASS_TGIS_PROFILE")
- if do_profiling == "True" or do_profiling == "1":
- import cProfile
- import pstats
- try:
- import StringIO as io
- except ImportError:
- import io
- pr = cProfile.Profile()
- pr.enable()
- func()
- pr.disable()
- s = io.StringIO()
- sortby = "cumulative"
- ps = pstats.Stats(pr, stream=s).sort_stats(sortby)
- ps.print_stats()
- print(s.getvalue())
- else:
- func()
- # Global variable that defines the backend
- # of the temporal GIS
- # It can either be "sqlite" or "pg"
- tgis_backend = None
- def get_tgis_backend():
- """Return the temporal GIS backend as string
- :returns: either "sqlite" or "pg"
- """
- global tgis_backend
- return tgis_backend
- # Global variable that defines the database string
- # of the temporal GIS
- tgis_database = None
- def get_tgis_database():
- """Return the temporal database string specified with t.connect"""
- global tgis_database
- return tgis_database
- # The version of the temporal framework
- # this value must be an integer larger than 0
- # Increase this value in case of backward incompatible changes in the TGIS API
- tgis_version = 2
- # The version of the temporal database since framework and database version
- # can differ this value must be an integer larger than 0
- # Increase this value in case of backward incompatible changes
- # temporal database SQL layout
- tgis_db_version = 3
- # We need to know the parameter style of the database backend
- tgis_dbmi_paramstyle = None
- def get_tgis_dbmi_paramstyle():
- """Return the temporal database backend parameter style
- :returns: "qmark" or ""
- """
- global tgis_dbmi_paramstyle
- return tgis_dbmi_paramstyle
- # We need to access the current mapset quite often in the framework, so we make
- # a global variable that will be initiated when init() is called
- current_mapset = None
- current_location = None
- current_gisdbase = None
- ###############################################################################
- def get_current_mapset():
- """Return the current mapset
- This is the fastest way to receive the current mapset.
- The current mapset is set by init() and stored in a global variable.
- This function provides access to this global variable.
- """
- global current_mapset
- return current_mapset
- ###############################################################################
- def get_current_location():
- """Return the current location
- This is the fastest way to receive the current location.
- The current location is set by init() and stored in a global variable.
- This function provides access to this global variable.
- """
- global current_location
- return current_location
- ###############################################################################
- def get_current_gisdbase():
- """Return the current gis database (gisdbase)
- This is the fastest way to receive the current gisdbase.
- The current gisdbase is set by init() and stored in a global variable.
- This function provides access to this global variable.
- """
- global current_gisdbase
- return current_gisdbase
- ###############################################################################
- # If this global variable is set True, then maps can only be registered in
- # space time datasets with the same mapset. In addition, only maps in the
- # current mapset can be inserted, updated or deleted from the temporal database.
- # Overwrite this global variable by: g.gisenv set="TGIS_DISABLE_MAPSET_CHECK=True"
- # ATTENTION: Be aware to face corrupted temporal database in case this global
- # variable is set to False. This feature is highly
- # experimental and violates the grass permission guidance.
- enable_mapset_check = True
- # If this global variable is set True, the timestamps of maps will be written
- # as textfiles for each map that will be inserted or updated in the temporal
- # database using the C-library timestamp interface.
- # Overwrite this global variable by: g.gisenv set="TGIS_DISABLE_TIMESTAMP_WRITE=True"
- # ATTENTION: Be aware to face corrupted temporal database in case this global
- # variable is set to False. This feature is highly
- # experimental and violates the grass permission guidance.
- enable_timestamp_write = True
- def get_enable_mapset_check():
- """Return True if the mapsets should be checked while insert, update,
- delete requests and space time dataset registration.
- If this global variable is set True, then maps can only be registered
- in space time datasets with the same mapset. In addition, only maps in
- the current mapset can be inserted, updated or deleted from the temporal
- database.
- Overwrite this global variable by: g.gisenv set="TGIS_DISABLE_MAPSET_CHECK=True"
- ..warning::
- Be aware to face corrupted temporal database in case this
- global variable is set to False. This feature is highly
- experimental and violates the grass permission guidance.
- """
- global enable_mapset_check
- return enable_mapset_check
- def get_enable_timestamp_write():
- """Return True if the map timestamps should be written to the spatial
- database metadata as well.
- If this global variable is set True, the timestamps of maps will be
- written as textfiles for each map that will be inserted or updated in
- the temporal database using the C-library timestamp interface.
- Overwrite this global variable by: g.gisenv set="TGIS_DISABLE_TIMESTAMP_WRITE=True"
- ..warning::
- Be aware that C-libraries can not access timestamp information if
- they are not written as spatial database metadata, hence modules
- that make use of timestamps using the C-library interface will not
- work with maps that were created without writing the timestamps.
- """
- global enable_timestamp_write
- return enable_timestamp_write
- ###############################################################################
- # The global variable that stores the PyGRASS Messenger object that
- # provides a fast and exit safe interface to the C-library message functions
- message_interface = None
- def _init_tgis_message_interface(raise_on_error=False):
- """Initiate the global message interface
- :param raise_on_error: If True raise a FatalError exception in case of
- a fatal error, call sys.exit(1) otherwise
- """
- global message_interface
- if message_interface is None:
- message_interface = messages.get_msgr(raise_on_error=raise_on_error)
- def get_tgis_message_interface():
- """Return the temporal GIS message interface which is of type
- grass.pygrass.message.Messenger()
- Use this message interface to print messages to stderr using the
- GRASS C-library messaging system.
- """
- global message_interface
- return message_interface
- ###############################################################################
- # The global variable that stores the C-library interface object that
- # provides a fast and exit safe interface to the C-library libgis,
- # libraster, libraster3d and libvector functions
- c_library_interface = None
- def _init_tgis_c_library_interface():
- """Set the global C-library interface variable that
- provides a fast and exit safe interface to the C-library libgis,
- libraster, libraster3d and libvector functions
- """
- global c_library_interface
- if c_library_interface is None:
- c_library_interface = CLibrariesInterface()
- def get_tgis_c_library_interface():
- """Return the C-library interface that
- provides a fast and exit safe interface to the C-library libgis,
- libraster, libraster3d and libvector functions
- """
- global c_library_interface
- return c_library_interface
- ###############################################################################
- # Set this variable True to raise a FatalError exception
- # in case a fatal error occurs using the messenger interface
- raise_on_error = False
- def set_raise_on_error(raise_exp=True):
- """Define behavior on fatal error, invoked using the tgis messenger
- interface (msgr.fatal())
- The messenger interface will be restarted using the new error policy
- :param raise_exp: True to raise a FatalError exception instead of calling
- sys.exit(1) when using the tgis messenger interface
- .. code-block:: python
- >>> import grass.temporal as tgis
- >>> tgis.init()
- >>> ignore = tgis.set_raise_on_error(False)
- >>> msgr = tgis.get_tgis_message_interface()
- >>> tgis.get_raise_on_error()
- False
- >>> msgr.fatal("Ohh no no no!")
- Traceback (most recent call last):
- File "__init__.py", line 239, in fatal
- sys.exit(1)
- SystemExit: 1
- >>> tgis.set_raise_on_error(True)
- False
- >>> msgr.fatal("Ohh no no no!")
- Traceback (most recent call last):
- File "__init__.py", line 241, in fatal
- raise FatalError(message)
- FatalError: Ohh no no no!
- :returns: current status
- """
- global raise_on_error
- tmp_raise = raise_on_error
- raise_on_error = raise_exp
- global message_interface
- if message_interface:
- message_interface.set_raise_on_error(raise_on_error)
- else:
- _init_tgis_message_interface(raise_on_error)
- return tmp_raise
- def get_raise_on_error():
- """Return True if a FatalError exception is raised instead of calling
- sys.exit(1) in case a fatal error was invoked with msgr.fatal()
- """
- global raise_on_error
- return raise_on_error
- ###############################################################################
- def get_tgis_version():
- """Get the supported version of the temporal framework
- :returns: The version number of the temporal framework as integer
- """
- global tgis_version
- return tgis_version
- ###############################################################################
- def get_tgis_db_version():
- """Get the supported version of the temporal database
- :returns: The version number of the temporal database as integer
- """
- global tgis_db_version
- return tgis_db_version
- def get_tgis_db_version_from_metadata(metadata=None):
- """Get the version number of the temporal database from metadata
- :param list metadata: list of metadata items or None
- :returns: The version number of the temporal database as integer
- """
- if metadata is None:
- metadata = get_tgis_metadata()
- for entry in metadata:
- if "tgis_db_version" in entry:
- return int(entry[1])
- # return supported version if not possible to get from metadata
- return get_tgis_db_version()
- ###############################################################################
- def get_tgis_metadata(dbif=None):
- """Return the tgis metadata table as a list of rows (dicts) or None if not
- present
- :param dbif: The database interface to be used
- :returns: The selected rows with key/value columns or None
- """
- dbif, connection_state_changed = init_dbif(dbif)
- # Select metadata if the table is present
- try:
- statement = "SELECT * FROM tgis_metadata;\n"
- dbif.execute(statement)
- rows = dbif.fetchall()
- except:
- rows = None
- if connection_state_changed:
- dbif.close()
- return rows
- ###############################################################################
- # The temporal database string set with t.connect
- # with substituted GRASS variables gisdbase, location and mapset
- tgis_database_string = None
- def get_tgis_database_string():
- """Return the preprocessed temporal database string
- This string is the temporal database string set with t.connect
- that was processed to substitue location, gisdbase and mapset
- variables.
- """
- global tgis_database_string
- return tgis_database_string
- ###############################################################################
- def get_sql_template_path():
- base = os.getenv("GISBASE")
- base_etc = os.path.join(base, "etc")
- return os.path.join(base_etc, "sql")
- ###############################################################################
- def stop_subprocesses():
- """Stop the messenger and C-interface subprocesses
- that are started by tgis.init()
- """
- global message_interface
- global c_library_interface
- if message_interface:
- message_interface.stop()
- if c_library_interface:
- c_library_interface.stop()
- # We register this function to be called at exit
- atexit.register(stop_subprocesses)
- def get_available_temporal_mapsets():
- """Return a list of of mapset names with temporal database driver and names
- that are accessible from the current mapset.
- :returns: A dictionary, mapset names are keys, the tuple (driver,
- database) are the values
- """
- global c_library_interface
- global message_interface
- mapsets = c_library_interface.available_mapsets()
- tgis_mapsets = {}
- for mapset in mapsets:
- mapset = mapset
- driver = c_library_interface.get_driver_name(mapset)
- database = c_library_interface.get_database_name(mapset)
- message_interface.debug(
- 1,
- "get_available_temporal_mapsets: "
- "\n mapset %s\n driver %s\n database %s" % (mapset, driver, database),
- )
- if driver and database:
- # Check if the temporal sqlite database exists
- # We need to set non-existing databases in case the mapset is the current mapset
- # to create it
- if (
- driver == "sqlite" and os.path.exists(database)
- ) or mapset == get_current_mapset():
- tgis_mapsets[mapset] = (driver, database)
- # We need to warn if the connection is defined but the database does not
- # exists
- if driver == "sqlite" and not os.path.exists(database):
- message_interface.warning(
- "Temporal database connection defined as:\n"
- + database
- + "\nBut database file does not exist."
- )
- return tgis_mapsets
- ###############################################################################
- def init(raise_fatal_error=False, skip_db_version_check=False):
- """This function set the correct database backend from GRASS environmental
- variables and creates the grass temporal database structure for raster,
- vector and raster3d maps as well as for the space-time datasets strds,
- str3ds and stvds in case it does not exist.
- Several global variables are initiated and the messenger and C-library
- interface subprocesses are spawned.
- Re-run this function in case the following GRASS variables change while
- the process runs:
- - MAPSET
- - LOCATION_NAME
- - GISDBASE
- - TGIS_DISABLE_MAPSET_CHECK
- - TGIS_DISABLE_TIMESTAMP_WRITE
- Re-run this function if the following t.connect variables change while
- the process runs:
- - temporal GIS driver (set by t.connect driver=)
- - temporal GIS database (set by t.connect database=)
- The following environmental variables are checked:
- - GRASS_TGIS_PROFILE (True, False, 1, 0)
- - GRASS_TGIS_RAISE_ON_ERROR (True, False, 1, 0)
- ..warning::
- This functions must be called before any spatio-temporal processing
- can be started
- :param raise_fatal_error: Set this True to assure that the init()
- function does not kill a persistent process
- like the GUI. If set True a
- grass.pygrass.messages.FatalError
- exception will be raised in case a fatal
- error occurs in the init process, otherwise
- sys.exit(1) will be called.
- :param skip_db_version_check: Set this True to skip mismatch temporal
- database version check.
- Recommended to be used only for
- upgrade_temporal_database().
- """
- # We need to set the correct database backend and several global variables
- # from the GRASS mapset specific environment variables of g.gisenv and t.connect
- global tgis_backend
- global tgis_database
- global tgis_database_string
- global tgis_dbmi_paramstyle
- global tgis_db_version
- global raise_on_error
- global enable_mapset_check
- global enable_timestamp_write
- global current_mapset
- global current_location
- global current_gisdbase
- raise_on_error = raise_fatal_error
- # We must run t.connect at first to create the temporal database and to
- # get the environmental variables
- gscript.run_command("t.connect", flags="c")
- grassenv = gscript.gisenv()
- # Set the global variable for faster access
- current_mapset = grassenv["MAPSET"]
- current_location = grassenv["LOCATION_NAME"]
- current_gisdbase = grassenv["GISDBASE"]
- # Check environment variable GRASS_TGIS_RAISE_ON_ERROR
- if (
- os.getenv("GRASS_TGIS_RAISE_ON_ERROR") == "True"
- or os.getenv("GRASS_TGIS_RAISE_ON_ERROR") == "1"
- ):
- raise_on_error = True
- # Check if the script library raises on error,
- # if so we do the same
- if gscript.get_raise_on_error() is True:
- raise_on_error = True
- # Start the GRASS message interface server
- _init_tgis_message_interface(raise_on_error)
- # Start the C-library interface server
- _init_tgis_c_library_interface()
- msgr = get_tgis_message_interface()
- msgr.debug(1, "Initiate the temporal database")
- msgr.debug(1, ("Raise on error id: %s" % str(raise_on_error)))
- ciface = get_tgis_c_library_interface()
- driver_string = ciface.get_driver_name()
- database_string = ciface.get_database_name()
- # Set the mapset check and the timestamp write
- if "TGIS_DISABLE_MAPSET_CHECK" in grassenv:
- if (
- gscript.encode(grassenv["TGIS_DISABLE_MAPSET_CHECK"]) == "True"
- or gscript.encode(grassenv["TGIS_DISABLE_MAPSET_CHECK"]) == "1"
- ):
- enable_mapset_check = False
- msgr.warning("TGIS_DISABLE_MAPSET_CHECK is True")
- if "TGIS_DISABLE_TIMESTAMP_WRITE" in grassenv:
- if (
- gscript.encode(grassenv["TGIS_DISABLE_TIMESTAMP_WRITE"]) == "True"
- or gscript.encode(grassenv["TGIS_DISABLE_TIMESTAMP_WRITE"]) == "1"
- ):
- enable_timestamp_write = False
- msgr.warning("TGIS_DISABLE_TIMESTAMP_WRITE is True")
- if driver_string is not None and driver_string != "":
- driver_string = decode(driver_string)
- if driver_string == "sqlite":
- tgis_backend = driver_string
- try:
- import sqlite3
- except ImportError:
- msgr.error(
- "Unable to locate the sqlite SQL Python interface"
- " module sqlite3."
- )
- raise
- dbmi = sqlite3
- elif driver_string == "pg":
- tgis_backend = driver_string
- try:
- import psycopg2
- except ImportError:
- msgr.error(
- "Unable to locate the Postgresql SQL Python "
- "interface module psycopg2."
- )
- raise
- dbmi = psycopg2
- else:
- msgr.fatal(
- _(
- "Unable to initialize the temporal DBMI interface. "
- "Please use t.connect to specify the driver and the"
- " database string"
- )
- )
- else:
- # Set the default sqlite3 connection in case nothing was defined
- gscript.run_command("t.connect", flags="d")
- driver_string = ciface.get_driver_name()
- database_string = ciface.get_database_name()
- tgis_backend = driver_string
- try:
- import sqlite3
- except ImportError:
- msgr.error(
- "Unable to locate the sqlite SQL Python interface" " module sqlite3."
- )
- raise
- dbmi = sqlite3
- tgis_database_string = database_string
- # Set the parameter style
- tgis_dbmi_paramstyle = dbmi.paramstyle
- # We do not know if the database already exists
- db_exists = False
- dbif = SQLDatabaseInterfaceConnection()
- # Check if the database already exists
- if tgis_backend == "sqlite":
- # Check path of the sqlite database
- if os.path.exists(tgis_database_string):
- dbif.connect()
- # Check for raster_base table
- dbif.execute(
- "SELECT name FROM sqlite_master WHERE type='table' "
- "AND name='raster_base';"
- )
- name = dbif.fetchone()
- if name and name[0] == "raster_base":
- db_exists = True
- dbif.close()
- elif tgis_backend == "pg":
- # Connect to database
- dbif.connect()
- # Check for raster_base table
- dbif.execute(
- "SELECT EXISTS(SELECT * FROM information_schema.tables "
- "WHERE table_name=%s)",
- ("raster_base",),
- )
- if dbif.fetchone()[0]:
- db_exists = True
- if tgis_db_version > 2:
- backup_howto = _(
- "Run t.upgrade command to upgrade your temporal database.\n"
- "Consider creating a backup of your temporal database to avoid "
- "loosing data in case something goes wrong.\n"
- )
- else:
- backup_howto = _(
- "You need to export it by "
- "restoring the GRASS GIS version used for creating this DB."
- "Notes: Use t.rast.export and t.vect.export "
- "to make a backup of your"
- " existing space time datasets. To save the timestamps of"
- " your existing maps and space time datasets, use "
- "t.rast.list, t.vect.list and t.rast3d.list. "
- "You can register the existing time stamped maps easily if"
- " you export columns=id,start_time,end_time into text "
- "files and use t.register to register them again in new"
- " created space time datasets (t.create). After the backup"
- " remove the existing temporal database, a new one will be"
- " created automatically.\n"
- )
- if db_exists is True:
- dbif.close()
- if skip_db_version_check is True:
- return
- # Check the version of the temporal database
- dbif.connect()
- metadata = get_tgis_metadata(dbif)
- dbif.close()
- if metadata is None:
- msgr.fatal(
- _(
- "Unable to receive temporal database metadata.\n"
- "Current temporal database info:%(info)s"
- )
- % ({"info": get_database_info_string()})
- )
- # temporal framework version check
- for entry in metadata:
- if "tgis_version" in entry and entry[1] != str(get_tgis_version()):
- msgr.fatal(
- _(
- "Unsupported temporal database: version mismatch."
- "\n %(backup)s Supported temporal API version is:"
- " %(api)i.\nPlease update your GRASS GIS "
- "installation.\nCurrent temporal database info:"
- "%(info)s"
- )
- % (
- {
- "backup": backup_howto,
- "api": get_tgis_version(),
- "info": get_database_info_string(),
- }
- )
- )
- # temporal database version check
- tgis_db_version_meta = get_tgis_db_version_from_metadata(metadata)
- if tgis_db_version_meta != tgis_db_version:
- message = _(
- "Temporal database version mismatch detected.\n{backup}"
- "Supported temporal database version is: {tdb}\n"
- "Your existing temporal database version: {ctdb}\n"
- "Current temporal database info: {info}".format(
- backup=backup_howto,
- tdb=tgis_db_version,
- ctdb=tgis_db_version_meta,
- info=get_database_info_string(),
- )
- )
- if tgis_db_version_meta == 2 and tgis_db_version == 3:
- # version 3 is backward compatible with version 2
- msgr.warning(message)
- else:
- msgr.fatal(
- _(
- "The format of your actual temporal database is "
- "not supported any more. {m}".format(m=message)
- )
- )
- return
- create_temporal_database(dbif)
- ###############################################################################
- def get_database_info_string():
- dbif = SQLDatabaseInterfaceConnection()
- info = "\nDBMI interface:..... " + str(dbif.get_dbmi().__name__)
- info += "\nTemporal database:.. " + str(get_tgis_database_string())
- return info
- ###############################################################################
- def _create_temporal_database_views(dbif):
- """Create all views in the temporal database (internal use only)
- Used by create_temporal_database() and upgrade_temporal_database().
- :param dbif: The database interface to be used
- """
- template_path = get_sql_template_path()
- for sql_filename in (
- "raster_views",
- "raster3d_views",
- "vector_views",
- "strds_views",
- "str3ds_views",
- "stvds_views",
- ):
- sql_filepath = open(
- os.path.join(template_path, sql_filename + ".sql"), "r"
- ).read()
- dbif.execute_transaction(sql_filepath)
- def create_temporal_database(dbif):
- """This function will create the temporal database
- It will create all tables and triggers that are needed to run
- the temporal GIS
- :param dbif: The database interface to be used
- """
- global tgis_backend
- global tgis_version
- global tgis_db_version
- global tgis_database_string
- template_path = get_sql_template_path()
- msgr = get_tgis_message_interface()
- # Read all SQL scripts and templates
- map_tables_template_sql = open(
- os.path.join(template_path, "map_tables_template.sql"), "r"
- ).read()
- raster_metadata_sql = open(
- os.path.join(get_sql_template_path(), "raster_metadata_table.sql"), "r"
- ).read()
- raster3d_metadata_sql = open(
- os.path.join(template_path, "raster3d_metadata_table.sql"), "r"
- ).read()
- vector_metadata_sql = open(
- os.path.join(template_path, "vector_metadata_table.sql"), "r"
- ).read()
- stds_tables_template_sql = open(
- os.path.join(template_path, "stds_tables_template.sql"), "r"
- ).read()
- strds_metadata_sql = open(
- os.path.join(template_path, "strds_metadata_table.sql"), "r"
- ).read()
- str3ds_metadata_sql = open(
- os.path.join(template_path, "str3ds_metadata_table.sql"), "r"
- ).read()
- stvds_metadata_sql = open(
- os.path.join(template_path, "stvds_metadata_table.sql"), "r"
- ).read()
- # Create the raster, raster3d and vector tables SQL statements
- raster_tables_sql = map_tables_template_sql.replace("GRASS_MAP", "raster")
- vector_tables_sql = map_tables_template_sql.replace("GRASS_MAP", "vector")
- raster3d_tables_sql = map_tables_template_sql.replace("GRASS_MAP", "raster3d")
- # Create the space-time raster, raster3d and vector dataset tables
- # SQL statements
- strds_tables_sql = stds_tables_template_sql.replace("STDS", "strds")
- stvds_tables_sql = stds_tables_template_sql.replace("STDS", "stvds")
- str3ds_tables_sql = stds_tables_template_sql.replace("STDS", "str3ds")
- msgr.message(_("Creating temporal database: %s" % (str(tgis_database_string))))
- if tgis_backend == "sqlite":
- # We need to create the sqlite3 database path if it does not exist
- tgis_dir = os.path.dirname(tgis_database_string)
- if not os.path.exists(tgis_dir):
- try:
- os.makedirs(tgis_dir)
- except Exception as e:
- msgr.fatal(
- _(
- "Unable to create SQLite temporal database\n"
- "Exception: %s\nPlease use t.connect to set a "
- "read- and writable temporal database path" % (e)
- )
- )
- # Set up the trigger that takes care of
- # the correct deletion of entries across the different tables
- delete_trigger_sql = open(
- os.path.join(template_path, "sqlite3_delete_trigger.sql"), "r"
- ).read()
- indexes_sql = open(
- os.path.join(template_path, "sqlite3_indexes.sql"), "r"
- ).read()
- else:
- # Set up the trigger that takes care of
- # the correct deletion of entries across the different tables
- delete_trigger_sql = open(
- os.path.join(template_path, "postgresql_delete_trigger.sql"), "r"
- ).read()
- indexes_sql = open(
- os.path.join(template_path, "postgresql_indexes.sql"), "r"
- ).read()
- # Connect now to the database
- if dbif.connected is not True:
- dbif.connect()
- # Execute the SQL statements
- # Create the global tables for the native grass datatypes
- dbif.execute_transaction(raster_tables_sql)
- dbif.execute_transaction(raster_metadata_sql)
- dbif.execute_transaction(vector_tables_sql)
- dbif.execute_transaction(vector_metadata_sql)
- dbif.execute_transaction(raster3d_tables_sql)
- dbif.execute_transaction(raster3d_metadata_sql)
- # Create the tables for the new space-time datatypes
- dbif.execute_transaction(strds_tables_sql)
- dbif.execute_transaction(strds_metadata_sql)
- dbif.execute_transaction(stvds_tables_sql)
- dbif.execute_transaction(stvds_metadata_sql)
- dbif.execute_transaction(str3ds_tables_sql)
- dbif.execute_transaction(str3ds_metadata_sql)
- # Create views
- _create_temporal_database_views(dbif)
- # The delete trigger
- dbif.execute_transaction(delete_trigger_sql)
- # The indexes
- dbif.execute_transaction(indexes_sql)
- # Create the tgis metadata table to store the database
- # initial configuration
- # The metadata table content
- metadata = {}
- metadata["tgis_version"] = tgis_version
- metadata["tgis_db_version"] = tgis_db_version
- metadata["creation_time"] = datetime.today()
- _create_tgis_metadata_table(metadata, dbif)
- dbif.close()
- ###############################################################################
- def upgrade_temporal_database(dbif):
- """This function will upgrade the temporal database if needed.
- It will update all tables and triggers that are requested by
- currently supported TGIS DB version.
- :param dbif: The database interface to be used
- """
- global tgis_database_string
- global tgis_db_version
- metadata = get_tgis_metadata(dbif)
- msgr = get_tgis_message_interface()
- if metadata is None:
- msgr.fatal(
- _(
- "Unable to receive temporal database metadata.\n"
- "Current temporal database info:%(info)s"
- )
- % ({"info": get_database_info_string()})
- )
- upgrade_db_from = None
- for entry in metadata:
- if "tgis_db_version" in entry and entry[1] != str(tgis_db_version):
- upgrade_db_from = entry[1]
- break
- if upgrade_db_from is None:
- msgr.message(_("Temporal database is up-to-date. Operation canceled"))
- dbif.close()
- return
- template_path = get_sql_template_path()
- try:
- upgrade_db_sql = open(
- os.path.join(
- template_path,
- "upgrade_db_%s_to_%s.sql" % (upgrade_db_from, tgis_db_version),
- ),
- "r",
- ).read()
- except FileNotFoundError:
- msgr.fatal(
- _("Unsupported TGIS DB upgrade scenario: from version %s to %s")
- % (upgrade_db_from, tgis_db_version)
- )
- drop_views_sql = open(os.path.join(template_path, "drop_views.sql"), "r").read()
- msgr.message(
- _("Upgrading temporal database <%s> from version %s to %s...")
- % (tgis_database_string, upgrade_db_from, tgis_db_version)
- )
- # Drop views
- dbif.execute_transaction(drop_views_sql)
- # Perform upgrade
- dbif.execute_transaction(upgrade_db_sql)
- # Recreate views
- _create_temporal_database_views(dbif)
- dbif.close()
- ###############################################################################
- def _create_tgis_metadata_table(content, dbif=None):
- """!Create the temporal gis metadata table which stores all metadata
- information about the temporal database.
- :param content: The dictionary that stores the key:value metadata
- that should be stored in the metadata table
- :param dbif: The database interface to be used
- """
- dbif, connection_state_changed = init_dbif(dbif)
- statement = "CREATE TABLE tgis_metadata (key VARCHAR NOT NULL, value VARCHAR);\n"
- dbif.execute_transaction(statement)
- for key in content.keys():
- statement = (
- "INSERT INTO tgis_metadata (key, value) VALUES "
- + "('%s' , '%s');\n" % (str(key), str(content[key]))
- )
- dbif.execute_transaction(statement)
- if connection_state_changed:
- dbif.close()
- ###############################################################################
- class SQLDatabaseInterfaceConnection(object):
- def __init__(self):
- self.tgis_mapsets = get_available_temporal_mapsets()
- self.current_mapset = get_current_mapset()
- self.connections = {}
- self.connected = False
- self.unique_connections = {}
- for mapset in self.tgis_mapsets.keys():
- driver, dbstring = self.tgis_mapsets[mapset]
- if dbstring not in self.unique_connections.keys():
- self.unique_connections[dbstring] = DBConnection(
- backend=driver, dbstring=dbstring
- )
- self.connections[mapset] = self.unique_connections[dbstring]
- self.msgr = get_tgis_message_interface()
- def get_dbmi(self, mapset=None):
- if mapset is None:
- mapset = self.current_mapset
- mapset = decode(mapset)
- return self.connections[mapset].dbmi
- def rollback(self, mapset=None):
- """
- Roll back the last transaction. This must be called
- in case a new query should be performed after a db error.
- This is only relevant for postgresql database.
- """
- if mapset is None:
- mapset = self.current_mapset
- def connect(self):
- """Connect to the DBMI to execute SQL statements
- Supported backends are sqlite3 and postgresql
- """
- for mapset in self.tgis_mapsets.keys():
- driver, dbstring = self.tgis_mapsets[mapset]
- conn = self.connections[mapset]
- if conn.is_connected() is False:
- conn.connect(dbstring)
- self.connected = True
- def is_connected(self):
- return self.connected
- def close(self):
- """Close the DBMI connection
- There may be several temporal databases in a location, hence
- close all temporal databases that have been opened.
- """
- for key in self.unique_connections.keys():
- self.unique_connections[key].close()
- self.connected = False
- def mogrify_sql_statement(self, content, mapset=None):
- """Return the SQL statement and arguments as executable SQL string
- :param content: The content as tuple with two entries, the first
- entry is the SQL statement with DBMI specific
- place holder (?), the second entry is the argument
- list that should substitute the place holder.
- :param mapset: The mapset of the abstract dataset or temporal
- database location, if None the current mapset
- will be used
- """
- if mapset is None:
- mapset = self.current_mapset
- mapset = decode(mapset)
- if mapset not in self.tgis_mapsets.keys():
- self.msgr.fatal(
- _(
- "Unable to mogrify sql statement. "
- + self._create_mapset_error_message(mapset)
- )
- )
- return self.connections[mapset].mogrify_sql_statement(content)
- def check_table(self, table_name, mapset=None):
- """Check if a table exists in the temporal database
- :param table_name: The name of the table to be checked for existence
- :param mapset: The mapset of the abstract dataset or temporal
- database location, if None the current mapset
- will be used
- :returns: True if the table exists, False otherwise
- TODO:
- There may be several temporal databases in a location, hence
- the mapset is used to query the correct temporal database.
- """
- if mapset is None:
- mapset = self.current_mapset
- mapset = decode(mapset)
- if mapset not in self.tgis_mapsets.keys():
- self.msgr.fatal(
- _("Unable to check table. " + self._create_mapset_error_message(mapset))
- )
- return self.connections[mapset].check_table(table_name)
- def execute(self, statement, args=None, mapset=None):
- """
- :param mapset: The mapset of the abstract dataset or temporal
- database location, if None the current mapset
- will be used
- """
- if mapset is None:
- mapset = self.current_mapset
- mapset = decode(mapset)
- if mapset not in self.tgis_mapsets.keys():
- self.msgr.fatal(
- _(
- "Unable to execute sql statement. "
- + self._create_mapset_error_message(mapset)
- )
- )
- return self.connections[mapset].execute(statement, args)
- def fetchone(self, mapset=None):
- if mapset is None:
- mapset = self.current_mapset
- mapset = decode(mapset)
- if mapset not in self.tgis_mapsets.keys():
- self.msgr.fatal(
- _("Unable to fetch one. " + self._create_mapset_error_message(mapset))
- )
- return self.connections[mapset].fetchone()
- def fetchall(self, mapset=None):
- if mapset is None:
- mapset = self.current_mapset
- mapset = decode(mapset)
- if mapset not in self.tgis_mapsets.keys():
- self.msgr.fatal(
- _("Unable to fetch all. " + self._create_mapset_error_message(mapset))
- )
- return self.connections[mapset].fetchall()
- def execute_transaction(self, statement, mapset=None):
- """Execute a transactional SQL statement
- The BEGIN and END TRANSACTION statements will be added automatically
- to the sql statement
- :param statement: The executable SQL statement or SQL script
- """
- if mapset is None:
- mapset = self.current_mapset
- mapset = decode(mapset)
- if mapset not in self.tgis_mapsets.keys():
- self.msgr.fatal(
- _(
- "Unable to execute transaction. "
- + self._create_mapset_error_message(mapset)
- )
- )
- return self.connections[mapset].execute_transaction(statement)
- def _create_mapset_error_message(self, mapset):
- return (
- "You have no permission to "
- "access mapset <%(mapset)s>, or "
- "mapset <%(mapset)s> has no temporal database. "
- "Accessible mapsets are: <%(mapsets)s>"
- % {"mapset": decode(mapset), "mapsets": ",".join(self.tgis_mapsets.keys())}
- )
- ###############################################################################
- class DBConnection(object):
- """This class represents the database interface connection
- and provides access to the chosen backend modules.
- The following DBMS are supported:
- - sqlite via the sqlite3 standard library
- - postgresql via psycopg2
- """
- def __init__(self, backend=None, dbstring=None):
- """Constructor of a database connection
- param backend:The database backend sqlite or pg
- param dbstring: The database connection string
- """
- self.connected = False
- if backend is None:
- global tgis_backend
- if decode(tgis_backend) == "sqlite":
- self.dbmi = sqlite3
- else:
- self.dbmi = psycopg2
- else:
- if decode(backend) == "sqlite":
- self.dbmi = sqlite3
- else:
- self.dbmi = psycopg2
- if dbstring is None:
- global tgis_database_string
- self.dbstring = tgis_database_string
- self.dbstring = dbstring
- self.msgr = get_tgis_message_interface()
- self.msgr.debug(
- 1,
- "DBConnection constructor:"
- "\n backend: %s"
- "\n dbstring: %s" % (backend, self.dbstring),
- )
- def __del__(self):
- if self.connected is True:
- self.close()
- def is_connected(self):
- return self.connected
- def rollback(self):
- """
- Roll back the last transaction. This must be called
- in case a new query should be performed after a db error.
- This is only relevant for postgresql database.
- """
- if self.dbmi.__name__ == "psycopg2":
- if self.connected:
- self.connection.rollback()
- def connect(self, dbstring=None):
- """Connect to the DBMI to execute SQL statements
- Supported backends are sqlite3 and postgresql
- param dbstring: The database connection string
- """
- # Connection in the current mapset
- if dbstring is None:
- dbstring = self.dbstring
- dbstring = decode(dbstring)
- try:
- if self.dbmi.__name__ == "sqlite3":
- self.connection = self.dbmi.connect(
- dbstring,
- detect_types=self.dbmi.PARSE_DECLTYPES | self.dbmi.PARSE_COLNAMES,
- )
- self.connection.row_factory = self.dbmi.Row
- self.connection.isolation_level = None
- self.connection.text_factory = str
- self.cursor = self.connection.cursor()
- self.cursor.execute("PRAGMA synchronous = OFF")
- self.cursor.execute("PRAGMA journal_mode = MEMORY")
- elif self.dbmi.__name__ == "psycopg2":
- self.connection = self.dbmi.connect(dbstring)
- # self.connection.set_isolation_level(dbmi.extensions.ISOLATION_LEVEL_AUTOCOMMIT)
- self.cursor = self.connection.cursor(
- cursor_factory=self.dbmi.extras.DictCursor
- )
- self.connected = True
- except Exception as e:
- self.msgr.fatal(
- _(
- "Unable to connect to %(db)s database: "
- '%(string)s\nException: "%(ex)s"\nPlease use'
- " t.connect to set a read- and writable "
- "temporal database backend"
- )
- % (
- {
- "db": self.dbmi.__name__,
- "string": tgis_database_string,
- "ex": e,
- }
- )
- )
- def close(self):
- """Close the DBMI connection
- TODO:
- There may be several temporal databases in a location, hence
- close all temporal databases that have been opened. Use a dictionary
- to manage different connections.
- """
- self.connection.commit()
- self.cursor.close()
- self.connected = False
- def mogrify_sql_statement(self, content):
- """Return the SQL statement and arguments as executable SQL string
- TODO:
- Use the mapset argument to identify the correct database driver
- :param content: The content as tuple with two entries, the first
- entry is the SQL statement with DBMI specific
- place holder (?), the second entry is the argument
- list that should substitute the place holder.
- :param mapset: The mapset of the abstract dataset or temporal
- database location, if None the current mapset
- will be used
- Usage:
- .. code-block:: python
- >>> init()
- >>> dbif = SQLDatabaseInterfaceConnection()
- >>> dbif.mogrify_sql_statement(["SELECT ctime FROM raster_base WHERE id = ?",
- ... ["soil@PERMANENT",]])
- "SELECT ctime FROM raster_base WHERE id = 'soil@PERMANENT'"
- """
- sql = content[0]
- args = content[1]
- if self.dbmi.__name__ == "psycopg2":
- if len(args) == 0:
- return sql
- else:
- if self.connected:
- try:
- return self.cursor.mogrify(sql, args)
- except Exception as exc:
- print(sql, args)
- raise exc
- else:
- self.connect()
- statement = self.cursor.mogrify(sql, args)
- self.close()
- return statement
- elif self.dbmi.__name__ == "sqlite3":
- if len(args) == 0:
- return sql
- else:
- # Unfortunately as sqlite does not support
- # the transformation of sql strings and qmarked or
- # named arguments we must make our hands dirty
- # and do it by ourself. :(
- # Doors are open for SQL injection because of the
- # limited python sqlite3 implementation!!!
- pos = 0
- count = 0
- maxcount = 100
- statement = sql
- while count < maxcount:
- pos = statement.find("?", pos + 1)
- if pos == -1:
- break
- if args[count] is None:
- statement = "%sNULL%s" % (
- statement[0:pos],
- statement[pos + 1 :],
- )
- elif isinstance(args[count], (int, long)):
- statement = "%s%d%s" % (
- statement[0:pos],
- args[count],
- statement[pos + 1 :],
- )
- elif isinstance(args[count], float):
- statement = "%s%f%s" % (
- statement[0:pos],
- args[count],
- statement[pos + 1 :],
- )
- elif isinstance(args[count], datetime):
- statement = "%s'%s'%s" % (
- statement[0:pos],
- str(args[count]),
- statement[pos + 1 :],
- )
- else:
- # Default is a string, this works for datetime
- # objects too
- statement = "%s'%s'%s" % (
- statement[0:pos],
- str(args[count]),
- statement[pos + 1 :],
- )
- count += 1
- return statement
- def check_table(self, table_name):
- """Check if a table exists in the temporal database
- :param table_name: The name of the table to be checked for existence
- :param mapset: The mapset of the abstract dataset or temporal
- database location, if None the current mapset
- will be used
- :returns: True if the table exists, False otherwise
- TODO:
- There may be several temporal databases in a location, hence
- the mapset is used to query the correct temporal database.
- """
- table_exists = False
- connected = False
- if not self.connected:
- self.connect()
- connected = True
- # Check if the database already exists
- if self.dbmi.__name__ == "sqlite3":
- self.cursor.execute(
- "SELECT name FROM sqlite_master WHERE "
- "type='table' AND name='%s';" % table_name
- )
- name = self.cursor.fetchone()
- if name and name[0] == table_name:
- table_exists = True
- else:
- # Check for raster_base table
- self.cursor.execute(
- "SELECT EXISTS(SELECT * FROM information_schema.tables "
- "WHERE table_name=%s)",
- ("%s" % table_name,),
- )
- if self.cursor.fetchone()[0]:
- table_exists = True
- if connected:
- self.close()
- return table_exists
- def execute(self, statement, args=None):
- """Execute a SQL statement
- :param statement: The executable SQL statement or SQL script
- """
- connected = False
- if not self.connected:
- self.connect()
- connected = True
- try:
- if args:
- self.cursor.execute(statement, args)
- else:
- self.cursor.execute(statement)
- except:
- if connected:
- self.close()
- self.msgr.error(_("Unable to execute :\n %(sql)s" % {"sql": statement}))
- raise
- if connected:
- self.close()
- def fetchone(self):
- if self.connected:
- return self.cursor.fetchone()
- return None
- def fetchall(self):
- if self.connected:
- return self.cursor.fetchall()
- return None
- def execute_transaction(self, statement, mapset=None):
- """Execute a transactional SQL statement
- The BEGIN and END TRANSACTION statements will be added automatically
- to the sql statement
- :param statement: The executable SQL statement or SQL script
- """
- connected = False
- if not self.connected:
- self.connect()
- connected = True
- sql_script = ""
- sql_script += "BEGIN TRANSACTION;\n"
- sql_script += statement
- sql_script += "END TRANSACTION;"
- try:
- if self.dbmi.__name__ == "sqlite3":
- self.cursor.executescript(statement)
- else:
- self.cursor.execute(statement)
- self.connection.commit()
- except:
- if connected:
- self.close()
- self.msgr.error(
- _("Unable to execute transaction:\n %(sql)s" % {"sql": statement})
- )
- raise
- if connected:
- self.close()
- ###############################################################################
- def init_dbif(dbif):
- """This method checks if the database interface connection exists,
- if not a new one will be created, connected and True will be returned.
- If the database interface exists but is not connected, the connection
- will be established.
- :returns: the tuple (dbif, connection_state_changed)
- Usage code sample:
- .. code-block:: python
- dbif, connection_state_changed = tgis.init_dbif(None)
- sql = dbif.mogrify_sql_statement(["SELECT * FROM raster_base WHERE ? = ?"],
- ["id", "soil@PERMANENT"])
- dbif.execute_transaction(sql)
- if connection_state_changed:
- dbif.close()
- """
- connection_state_changed = False
- if dbif is None:
- dbif = SQLDatabaseInterfaceConnection()
- dbif.connect()
- connection_state_changed = True
- elif dbif.is_connected() is False:
- dbif.connect()
- connection_state_changed = True
- return dbif, connection_state_changed
- ###############################################################################
- if __name__ == "__main__":
- import doctest
- doctest.testmod()
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