|
@@ -170,6 +170,7 @@ with dag:
|
|
|
'cellranger_xcom_key':'cellranger_output',
|
|
|
'cellranger_xcom_pull_task':'run_cellranger',
|
|
|
'collection_type':'CELLRANGER_MULTI',
|
|
|
+ 'html_collection_type':'CELLRANGER_HTML',
|
|
|
'collection_table':'sample',
|
|
|
'xcom_collection_name_key':'sample_igf_id',
|
|
|
'genome_column':'genome_build',
|
|
@@ -187,7 +188,7 @@ with dag:
|
|
|
'xcom_pull_files_key':'html_report_file',
|
|
|
'collection_name_task':'load_cellranger_result_to_db',
|
|
|
'collection_name_key':'sample_igf_id',
|
|
|
- 'collection_type':'FTP_CELLRANGER_MULTI',
|
|
|
+ 'collection_type':'FTP_CELLRANGER_HTML',
|
|
|
'collection_table':'sample',
|
|
|
'collect_remote_file':True})
|
|
|
upload_cellranger_report_to_box = \
|
|
@@ -977,6 +978,6 @@ with dag:
|
|
|
'FTP_SCIRPY_VDJ_HTML',
|
|
|
'FTP_CELLBROWSER',
|
|
|
'FTP_SCANPY_HTML',
|
|
|
- 'FTP_CELLRANGER_MULTI']})
|
|
|
+ 'FTP_CELLRANGER_HTML']})
|
|
|
## PIPELINE
|
|
|
update_analysis_and_status >> update_qc_pages
|