updated airflow vars

airflow_var/var.json

@@ -57,7 +57,7 @@
   "ftp_username": "igf",
   "ftp_project_path": "/www/html/report/project",
   "all_cell_marker_list": "/project/tgu/resources/pipeline_resource/cell_markers/PangaloDB/PanglaoDB_markers_27_Mar_2020.tsv",
-  "cellranger_exe": "/project/tgu/resources/cellranger-6.1.1/bin/cellranger",
+  "cellranger_exe": "/project/tgu/resources/cellranger-6.1.2/bin/cellranger",
   "base_result_dir": "/project/tgu/data2/results",
   "cellranger_job_timeout": 259200,
   "cutadapt_singularity_image": "/project/tgu/resources/pipeline_resource/singularity_images/cutadapt/cutadapt_v3.1.sif",
@@ -81,13 +81,13 @@
   "cellranger_ref_path": "/project/tgu/resources/pipeline_resource/transcriptome/cellranger",
   "hpc_queue_list": {
     "hpc_1G": {
-      "pbs_resource": "-lselect=1:ncpus=1:mem=1gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=1:mem=1gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G"},
     "hpc_1G4t": {
-      "pbs_resource": "-lselect=1:ncpus=4:mem=1gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=4:mem=1gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t"},
     "hpc_4G": {
-      "pbs_resource": "-lselect=1:ncpus=1:mem=4gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=1:mem=4gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_4G"},
     "hpc_4G12hr": {
       "pbs_resource": "-lselect=1:ncpus=1:mem=4gb -lwalltime=12:00:00",
@@ -96,49 +96,49 @@
       "pbs_resource": "-lselect=1:ncpus=1:mem=4gb -lwalltime=48:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G12hr,hpc_4G48hr"},
     "hpc_4G4t": {
-      "pbs_resource": "-lselect=1:ncpus=4:mem=4gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=4:mem=4gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t"},
     "hpc_4G8t": {
-      "pbs_resource": "-lselect=1:ncpus=8:mem=4gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=8:mem=4gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t"},
     "hpc_4G16t": {
-      "pbs_resource": "-lselect=1:ncpus=16:mem=4gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=16:mem=4gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t"},
     "hpc_8G": {
-      "pbs_resource": "-lselect=1:ncpus=1:mem=8gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=1:mem=8gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_4G,hpc_8G"},
     "hpc_8G4t": {
-      "pbs_resource": "-lselect=1:ncpus=4:mem=8gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=4:mem=8gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_8G,hpc_8G4t"},
     "hpc_8G24hr": {
         "pbs_resource": "-lselect=1:ncpus=1:mem=8gb -lwalltime=24:00:00",
         "airflow_queue": "hpc_1G,hpc_4G,hpc_4G12hr,hpc_8G,hpc_8G24hr"},
     "hpc_8G8t": {
-      "pbs_resource": "-lselect=1:ncpus=8:mem=8gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=8:mem=8gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_8G,hpc_8G4t,hpc_8G8t"},
     "hpc_8G16t": {
-      "pbs_resource": "-lselect=1:ncpus=16:mem=8gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=16:mem=8gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16t"},
     "hpc_16G24hr": {
         "pbs_resource": "-lselect=1:ncpus=1:mem=16gb -lwalltime=24:00:00",
         "airflow_queue": "hpc_1G,hpc_4G,hpc_4G12hr,hpc_8G,hpc_16G24hr"},
     "hpc_16G4t": {
-      "pbs_resource": "-lselect=1:ncpus=4:mem=16gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=4:mem=16gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_8G,hpc_8G4t,hpc_16G4t"},
     "hpc_16G8t": {
-      "pbs_resource": "-lselect=1:ncpus=8:mem=16gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=8:mem=16gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_16G4t,hpc_16G8t"},
     "hpc_16G16t": {
-      "pbs_resource": "-lselect=1:ncpus=16:mem=16gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=16:mem=16gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16,hpc_16G4t,hpc_16G8t,hpc_16G16t"},
     "hpc_32G8t": {
-      "pbs_resource": "-lselect=1:ncpus=16:mem=32gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=16:mem=32gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16,hpc_16G4t,hpc_16G8t,hpc_16G8t,hpc_32G8t"},
     "hpc_32G16t": {
-      "pbs_resource": "-lselect=1:ncpus=16:mem=32gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=16:mem=32gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16,hpc_16G4t,hpc_16G8t,hpc_16G16t,hpc_32G16t"},
     "hpc_42G16t": {
-      "pbs_resource": "-lselect=1:ncpus=16:mem=42gb -lwalltime=06:00:00",
+      "pbs_resource": "-lselect=1:ncpus=16:mem=42gb -lwalltime=12:00:00",
       "airflow_queue": "hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16,hpc_16G4t,hpc_16G8t,hpc_16G16t,hpc_32G16,hpc_42G16t"},
     "hpc_64G16t24hr": {
       "pbs_resource": "-lselect=1:ncpus=16:mem=64gb -lwalltime=24:00:00",