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minor changes for matrics loading

Avik Datta 4 år sedan
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8232c5df82
1 ändrade filer med 4 tillägg och 4 borttagningar
  1. 4 4
      dags/dag9_tenx_single_cell_immune_profiling.py

+ 4 - 4
dags/dag9_tenx_single_cell_immune_profiling.py

@@ -243,7 +243,7 @@ with dag:
       python_callable=load_cellranger_metrices_to_collection,
       params={'cellranger_xcom_key':'cellranger_output',
               'cellranger_xcom_pull_task':'run_cellranger',
-              'collection_type':'ANALYSIS_CRAM',
+              'collection_type':'CELLRANGER_MULTI',
               'collection_name_task':'load_cellranger_result_to_db',
               'collection_name_key':'sample_igf_id',
               'metrics_summary_file':'count/metrics_summary.csv',
@@ -330,7 +330,7 @@ with dag:
       python_callable=load_cellranger_metrices_to_collection,
       params={'cellranger_xcom_key':'cellranger_output',
               'cellranger_xcom_pull_task':'run_cellranger',
-              'collection_type':'ANALYSIS_CRAM',
+              'collection_type':'CELLRANGER_MULTI',
               'collection_name_task':'load_cellranger_result_to_db',
               'collection_name_key':'sample_igf_id',
               'metrics_summary_file':'vdj/metrics_summary.csv',
@@ -403,7 +403,7 @@ with dag:
       python_callable=load_cellranger_metrices_to_collection,
       params={'cellranger_xcom_key':'cellranger_output',
               'cellranger_xcom_pull_task':'run_cellranger',
-              'collection_type':'ANALYSIS_CRAM',
+              'collection_type':'CELLRANGER_MULTI',
               'collection_name_task':'load_cellranger_result_to_db',
               'collection_name_key':'sample_igf_id',
               'metrics_summary_file':'vdj_b/metrics_summary.csv',
@@ -476,7 +476,7 @@ with dag:
       python_callable=load_cellranger_metrices_to_collection,
       params={'cellranger_xcom_key':'cellranger_output',
               'cellranger_xcom_pull_task':'run_cellranger',
-              'collection_type':'ANALYSIS_CRAM',
+              'collection_type':'CELLRANGER_MULTI',
               'collection_name_task':'load_cellranger_result_to_db',
               'collection_name_key':'sample_igf_id',
               'metrics_summary_file':'vdj_t/metrics_summary.csv',