minor changes

airflow_var/var.json

@@ -7,6 +7,8 @@
   "hpc_ssh_key_file": "/home/igf/.ssh/id_rsa",
   "hpc_max_workers_per_queue": 10,
   "hpc_max_total_workers": 40,
+  "crick_ftp_seqrun_hostname": "hermes.crick.ac.uk",
+  "crick_ftp_config_file": "/home/igf/igf_code/airflow/secret/crick_ftp_config.json",
   "seqrun_base_path": "/home/igf/seqrun/illumina",
   "seqrun_server_user": "igf",
   "database_config_file": "/rds/general/user/igf/home/secret_keys/dbconfig.json",

scripts/hpc/run_hpc_scheduler.sh

@@ -1,5 +1,4 @@
 #!/bin/bash
-#PBS -q pqcgi
 #PBS -N airflow-scheduler
 #PBS -o /dev/null
 #PBS -e /dev/null