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@@ -55,7 +55,10 @@
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"multiqc_template_file":"",
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"picard_singularity_image":"",
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"samtools_singularity_image":"",
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- "":"",
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+ "igenome_base_path":"",
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+ "nextflow_template_file":"",
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+ "nextflow_exe":"",
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+ "nextflow_singularity_cache_dir":"",
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"hpc_queue_list":{
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"hpc_1G": {
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"pbs_resource":"-lselect=1:ncpus=1:mem=1gb -lwalltime=02:00:00",
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@@ -66,6 +69,9 @@
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"hpc_4G":{
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"pbs_resource":"-lselect=1:ncpus=1:mem=4gb -lwalltime=02:00:00",
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"airflow_queue":"hpc_1G,hpc_4G"},
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+ "hpc_4G_long":{
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+ "pbs_resource":"-lselect=1:ncpus=1:mem=4gb -lwalltime=06:00:00",
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+ "airflow_queue":"hpc_1G,hpc_4G,hpc_4G_long"},
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"hpc_4G48hr":{
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"pbs_resource":"-lselect=1:ncpus=1:mem=4gb -lwalltime=48:00:00",
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"airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G48hr"},
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