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@@ -567,7 +567,7 @@ with dag:
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'collection_name_key':'sample_igf_id',
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'analysis_name':'cellranger_multi'})
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## PIPELINE
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- decide_analysis_branch >> copy_bam_for_parallel_runs
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+ decide_analysis_branch >> convert_cellranger_bam_to_cram
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convert_cellranger_bam_to_cram >> copy_bam_for_parallel_runs # we need to load metrics to cram
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convert_cellranger_bam_to_cram >> upload_cram_to_irods
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## TASK
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