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@@ -59,7 +59,7 @@ with dag:
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task_id='configure_cellranger_run',
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dag=dag,
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queue='hpc_4G',
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- params={'xcom_pull_task_id':'fetch_analysis_info_and_branch',
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+ params={'xcom_pull_task_id':'fetch_analysis_info',
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'analysis_description_xcom_key':'analysis_description',
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'analysis_info_xcom_key':'analysis_info',
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'library_csv_xcom_key':'cellranger_library_csv'},
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@@ -78,7 +78,7 @@ with dag:
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task_id='run_trim_{0}_{1}'.format(analysis_name,run_id),
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dag=dag,
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queue='hpc_4G',
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- params={'xcom_pull_task_id':'fetch_analysis_info_and_branch',
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+ params={'xcom_pull_task_id':'fetch_analysis_info',
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'analysis_info_xcom_key':'analysis_info',
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'analysis_description_xcom_key':'analysis_description',
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'analysis_name':analysis_name,
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@@ -112,7 +112,7 @@ with dag:
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task_id='run_cellranger',
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dag=dag,
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queue='hpc_64G16t24hr',
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- params={'analysis_description_xcom_pull_task':'fetch_analysis_info_and_branch',
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+ params={'analysis_description_xcom_pull_task':'fetch_analysis_info',
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'analysis_description_xcom_key':'analysis_description',
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'library_csv_xcom_key':'cellranger_library_csv',
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'library_csv_xcom_pull_task':'configure_cellranger_run',
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@@ -147,7 +147,7 @@ with dag:
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dag=dag,
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queue='hpc_4G',
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python_callable=load_cellranger_result_to_db_func,
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- params={'analysis_description_xcom_pull_task':'fetch_analysis_info_and_branch',
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+ params={'analysis_description_xcom_pull_task':'fetch_analysis_info',
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'analysis_description_xcom_key':'analysis_description',
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'cellranger_xcom_key':'cellranger_output',
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'cellranger_xcom_pull_task':'run_cellranger',
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@@ -207,7 +207,7 @@ with dag:
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'allow_errors':False,
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'output_notebook_key':'scanpy_notebook',
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'output_cellbrowser_key':'cellbrowser_dirs',
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- 'analysis_description_xcom_pull_task':'fetch_analysis_info_and_branch',
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+ 'analysis_description_xcom_pull_task':'fetch_analysis_info',
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'analysis_description_xcom_key':'analysis_description'})
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load_scanpy_report_for_sc_5p_to_db = \
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PythonOperator(
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@@ -275,7 +275,7 @@ with dag:
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'count_dir':'count',
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'cell_marker_list':Variable.get('all_cell_marker_list'),
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'output_notebook_key':'scirpy_notebook',
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- 'analysis_description_xcom_pull_task':'fetch_analysis_info_and_branch',
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+ 'analysis_description_xcom_pull_task':'fetch_analysis_info',
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'analysis_description_xcom_key':'analysis_description',
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'template_ipynb_path':Variable.get('scirpy_single_sample_template'),
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'singularity_image_path':Variable.get('scirpy_notebook_image')})
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@@ -331,7 +331,7 @@ with dag:
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'count_dir':'count',
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'cell_marker_list':Variable.get('all_cell_marker_list'),
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'output_notebook_key':'scirpy_notebook',
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- 'analysis_description_xcom_pull_task':'fetch_analysis_info_and_branch',
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+ 'analysis_description_xcom_pull_task':'fetch_analysis_info',
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'analysis_description_xcom_key':'analysis_description',
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'template_ipynb_path':Variable.get('scirpy_single_sample_template'),
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'singularity_image_path':Variable.get('scirpy_notebook_image')})
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@@ -387,7 +387,7 @@ with dag:
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'count_dir':'count',
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'cell_marker_list':Variable.get('all_cell_marker_list'),
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'output_notebook_key':'scirpy_notebook',
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- 'analysis_description_xcom_pull_task':'fetch_analysis_info_and_branch',
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+ 'analysis_description_xcom_pull_task':'fetch_analysis_info',
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'analysis_description_xcom_key':'analysis_description',
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'template_ipynb_path':Variable.get('scirpy_single_sample_template'),
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'singularity_image_path':Variable.get('scirpy_notebook_image')})
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@@ -443,7 +443,7 @@ with dag:
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'count_dir':'count',
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'cell_marker_list':Variable.get('all_cell_marker_list'),
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'output_notebook_key':'seurat_notebook',
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- 'analysis_description_xcom_pull_task':'fetch_analysis_info_and_branch',
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+ 'analysis_description_xcom_pull_task':'fetch_analysis_info',
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'analysis_description_xcom_key':'analysis_description',
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'template_ipynb_path':Variable.get('seurat_single_sample_template'),
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'singularity_image_path':Variable.get('seurat_notebook_image')})
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