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@@ -545,8 +545,8 @@ with dag:
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python_callable=generate_cell_sorted_bam_func,
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params={'xcom_pull_task': 'run_cellranger',
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'xcom_pull_files_key': 'cellranger_output',
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- 'cellranger_bam_path': 'count/possorted_genome_bam.bam',
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- 'cellsorted_bam_path': 'count/cellsorted_possorted_genome_bam.bam',
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+ 'cellranger_bam_path': 'count/sample_alignments.bam',
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+ 'cellsorted_bam_path': 'count/cellsorted_sample_alignments.bam',
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'samtools_mem': '2G',
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'threads': 7})
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run_velocyto = \
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@@ -556,6 +556,7 @@ with dag:
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python_callable=run_velocyto_func,
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params={'xcom_pull_task': 'run_cellranger',
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'xcom_pull_files_key': 'cellranger_output',
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+ 'cell_sorted_bam_name': 'count/cellsorted_sample_alignments.bam',
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'analysis_description_xcom_pull_task': 'fetch_analysis_info',
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'analysis_description_xcom_key': 'analysis_description' })
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run_scvelo_for_sc_5p = \
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