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@@ -47,13 +47,13 @@ with dag:
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queue='hpc_4G',
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params={'ftp_seqrun_server': FTP_SEQRUN_SERVER,
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'seqrun_base_path': SEQRUN_BASE_PATH,
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- 'ftp_config_file': FTP_CONFIG_FILE,
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- 'seqrun_id': '{{ dag_run.conf["seqrun_id"] if dag_run else "" }}'},
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+ 'ftp_config_file': FTP_CONFIG_FILE},
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+ env={'seqrun_id': '{{ dag_run.conf["seqrun_id"] if dag_run else "" }}'},
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command="""
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source /home/igf/igf_code/airflow/env.sh;
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python /home/igf/igf_code/airflow/data-management-python/scripts/ftp_seqrun_transfer/transfer_seqrun_from_crick.py \
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-f {{ params.ftp_seqrun_server }} \
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- -s {{ params.seqrun_id }} \
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+ -s \'$seqrun_id\' \
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-d {{ params.seqrun_base_path }} \
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-c {{ params.ftp_config_file }}
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""")
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