updated default confs

airflow_var/conn.json

@@ -0,0 +1,3 @@
+{
+  "hpc_conn":"ssh://hpc_conn"
+}

airflow_var/var.json

@@ -4,7 +4,7 @@
   "hpc_user":"igf",
   "igf_lims_ssh_key_file":"/SSH/id_rsa",
   "hpc_ssh_key_file":"/home/igf/.ssh/id_rsa",
-  "seqrun_server":"",
+  "seqrun_server":"seqrun_server",
   "seqrun_base_path":"",
   "seqrun_server_user":"",
   "database_config_file":"",
@@ -17,6 +17,9 @@
   "box_dir_prefix_for_seqrun_report":"",
   "box_username":"",
   "box_config_file":"",
+  "bcl2fastq_image_path":"",
+  "pandoc_image_path":"",
+  "singlecell_barcode_json":"",
   "hpc_queue_list":{
     "hpc_1G": {
       "pbs_resource":"-lselect=1:ncpus=1:mem=1gb -lwalltime=02:00:00",