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@@ -537,14 +537,14 @@ with dag:
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PythonOperator(
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task_id='generate_cell_sorted_bam',
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dag=dag,
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- queue='hpc_8G8t',
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+ queue='hpc_16G8t',
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python_callable=generate_cell_sorted_bam_func,
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params={'xcom_pull_task': 'run_cellranger',
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'xcom_pull_files_key': 'cellranger_output',
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'cellranger_bam_path': 'count/possorted_genome_bam.bam',
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'cellsorted_bam_path': 'count/cellsorted_possorted_genome_bam.bam',
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- 'samtools_mem': '6000M',
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- 'threads':6})
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+ 'samtools_mem': '12000M',
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+ 'threads': 6})
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run_velocyto = \
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PythonOperator(
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task_id='run_velocyto',
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