 Avik Datta
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b1a437dade
fix for temp dir
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4 years ago |
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Avik Datta
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32ff1447a7
fix for dataflow
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4 years ago |
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Avik Datta
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1f3f1a3ed9
fix for genome build fetching and html report loading
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4 years ago |
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Avik Datta
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bd1bfaa4ed
updating qc page
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4 years ago |
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Avik Datta
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f3dcc5287f
added temp file clean up and picard matrics upload to box
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4 years ago |
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Avik Datta
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18bb7190de
fix for R kernel name
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4 years ago |
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Avik Datta
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9a4e860c7d
fix for xcom pull task name
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4 years ago |
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Avik Datta
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5f7994f6cd
passing task name for collection name fetching
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4 years ago |
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Avik Datta
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9ed503db69
minor fix for dataflow
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4 years ago |
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Avik Datta
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4cd4c69e37
moved cram conversion before bam copy
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4 years ago |
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Avik Datta
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2c50862839
fix for picard input fetching
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4 years ago |
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Avik Datta
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1f24e57067
added samtools image path to var json
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4 years ago |
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Avik Datta
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998b77e9eb
fix for dag9 flow
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4 years ago |
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Avik Datta
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e5cb1168ed
change in temp dir settings
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4 years ago |
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Avik Datta
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b187bc603e
minor fix
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4 years ago |
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Avik Datta
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c5024523b7
removed old func ref
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4 years ago |
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Avik Datta
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aae6b81482
no deserialize_json
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4 years ago |
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Avik Datta
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5bf9f83100
changed features to dictionary
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4 years ago |
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Avik Datta
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6b1ca90b69
change pipeline status
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4 years ago |
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Avik Datta
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5876305ac2
passing task as list from variable
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4 years ago |
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Avik Datta
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6be350c6b4
loading multiqc to ftp and box
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4 years ago |
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Avik Datta
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21ebd05927
added bam copy for parallel picard runs
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4 years ago |
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Avik Datta
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a5f0e62237
updated vars list
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4 years ago |
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Avik Datta
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5e5d949444
added multiqc
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4 years ago |
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Avik Datta
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bc31be2692
added samtools
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4 years ago |
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Avik Datta
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f5f00d7a60
added picard tasks
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4 years ago |
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Avik Datta
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52d67d695b
irods upload
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4 years ago |
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Avik Datta
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572c9d9367
bam2cram
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4 years ago |
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Avik Datta
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08701188b1
bam2cram
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4 years ago |
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Avik Datta
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a681763c62
added box upload
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4 years ago |
