 Avik Datta
|
9a4e860c7d
fix for xcom pull task name
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4 anni fa |
|
Avik Datta
|
5f7994f6cd
passing task name for collection name fetching
|
4 anni fa |
|
Avik Datta
|
9ed503db69
minor fix for dataflow
|
4 anni fa |
|
Avik Datta
|
4cd4c69e37
moved cram conversion before bam copy
|
4 anni fa |
|
Avik Datta
|
2c50862839
fix for picard input fetching
|
4 anni fa |
|
Avik Datta
|
998b77e9eb
fix for dag9 flow
|
4 anni fa |
|
Avik Datta
|
e5cb1168ed
change in temp dir settings
|
4 anni fa |
|
Avik Datta
|
b187bc603e
minor fix
|
4 anni fa |
|
Avik Datta
|
c5024523b7
removed old func ref
|
4 anni fa |
|
Avik Datta
|
aae6b81482
no deserialize_json
|
4 anni fa |
|
Avik Datta
|
5bf9f83100
changed features to dictionary
|
4 anni fa |
|
Avik Datta
|
6b1ca90b69
change pipeline status
|
4 anni fa |
|
Avik Datta
|
5876305ac2
passing task as list from variable
|
4 anni fa |
|
Avik Datta
|
6be350c6b4
loading multiqc to ftp and box
|
4 anni fa |
|
Avik Datta
|
21ebd05927
added bam copy for parallel picard runs
|
4 anni fa |
|
Avik Datta
|
5e5d949444
added multiqc
|
4 anni fa |
|
Avik Datta
|
bc31be2692
added samtools
|
4 anni fa |
|
Avik Datta
|
f5f00d7a60
added picard tasks
|
4 anni fa |
|
Avik Datta
|
52d67d695b
irods upload
|
4 anni fa |
|
Avik Datta
|
572c9d9367
bam2cram
|
4 anni fa |
|
Avik Datta
|
08701188b1
bam2cram
|
4 anni fa |
|
Avik Datta
|
a681763c62
added box upload
|
4 anni fa |
|
Avik Datta
|
d3b1d04108
added analysis name for notebook run
|
4 anni fa |
|
Avik Datta
|
61916b78e1
removing redundant function from notebook run
|
4 anni fa |
|
Avik Datta
|
0fb5301c99
converted dummy operators to python operators with null function
|
4 anni fa |
|
Avik Datta
|
60021a9b2e
changed task names
|
4 anni fa |
|
Avik Datta
|
543ac79c1a
reducing retries for failed job
|
4 anni fa |
|
Avik Datta
|
42f4527c6c
fix for task name
|
4 anni fa |
|
Avik Datta
|
9374e8fc6d
updated cellranger conf
|
4 anni fa |
|
Avik Datta
|
1655888de3
trigger rule for last step
|
4 anni fa |
