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- {
- "redis_conn_file":"/rds/general/user/igf/home/data2/airflow_test/secrets/redis_conn.json",
- "hpc_host":"login.hpc.ic.ac.uk",
- "hpc_user":"igf",
- "igf_lims_ssh_key_file":"/SSH/id_rsa",
- "hpc_ssh_key_file":"/home/igf/.ssh/id_rsa",
- "seqrun_server":"",
- "seqrun_base_path":"",
- "database_config_file":"",
- "slack_conf":"",
- "asana_conf":"",
- "asana_demult_project":"",
- "ms_teams_conf":"",
- "hpc_seqrun_path":"",
- "hpc_queue_list":{
- "hpc_1G": {
- "pbs_resource":"-lselect=1:ncpus=1:mem=1gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G"},
- "hpc_1G4t":{
- "pbs_resource":"-lselect=1:ncpus=4:mem=1gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t"},
- "hpc_4G":{
- "pbs_resource":"-lselect=1:ncpus=1:mem=4gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_4G"},
- "hpc_4G48hr":{
- "pbs_resource":"-lselect=1:ncpus=1:mem=4gb -lwalltime=48:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G48hr"},
- "hpc_4G4t":{
- "pbs_resource":"-lselect=1:ncpus=4:mem=4gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t"},
- "hpc_4G8t":{
- "pbs_resource":"-lselect=1:ncpus=8:mem=4gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t"},
- "hpc_4G16t":{
- "pbs_resource":"-lselect=1:ncpus=16:mem=4gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t"},
- "hpc_8G":{
- "pbs_resource":"-lselect=1:ncpus=1:mem=8gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_4G,hpc_8G"},
- "hpc_8G4t":{
- "pbs_resource":"-lselect=1:ncpus=4:mem=8gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_8G,hpc_8G4t"},
- "hpc_8G8t":{
- "pbs_resource":"-lselect=1:ncpus=8:mem=8gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_8G,hpc_8G4t,hpc_8G8t"},
- "hpc_8G16t":{
- "pbs_resource":"-lselect=1:ncpus=16:mem=8gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16t"},
- "hpc_16G4t":{
- "pbs_resource":"-lselect=1:ncpus=4:mem=16gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_8G,hpc_8G4t,hpc_16G4t"},
- "hpc_16G8t":{
- "pbs_resource":"-lselect=1:ncpus=8:mem=16gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_16G4t,hpc_16G8t"},
- "hpc_16G16t":{
- "pbs_resource":"-lselect=1:ncpus=16:mem=16gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16,hpc_16G4t,hpc_16G8t,hpc_16G16t"},
- "hpc_32G16t":{
- "pbs_resource":"-lselect=1:ncpus=16:mem=32gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16,hpc_16G4t,hpc_16G8t,hpc_16G16t,hpc_32G16t"},
- "hpc_42G16t":{
- "pbs_resource":"-lselect=1:ncpus=16:mem=42gb -lwalltime=02:00:00",
- "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16,hpc_16G4t,hpc_16G8t,hpc_16G16t,hpc_32G16,hpc_42G16t"}
- }
- }
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