var.json 3.2 KB

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  1. {
  2. "redis_conn_file":"/rds/general/user/igf/home/data2/airflow_test/secrets/redis_conn.json",
  3. "hpc_host":"login.hpc.ic.ac.uk",
  4. "hpc_user":"igf",
  5. "igf_lims_ssh_key_file":"/SSH/id_rsa",
  6. "hpc_ssh_key_file":"/home/igf/.ssh/id_rsa",
  7. "seqrun_server":"",
  8. "seqrun_base_path":"",
  9. "database_config_file":"",
  10. "slack_conf":"",
  11. "asana_conf":"",
  12. "asana_demult_project":"",
  13. "ms_teams_conf":"",
  14. "hpc_seqrun_path":"",
  15. "hpc_queue_list":{
  16. "hpc_1G": {
  17. "pbs_resource":"-lselect=1:ncpus=1:mem=1gb -lwalltime=02:00:00",
  18. "airflow_queue":"hpc_1G"},
  19. "hpc_1G4t":{
  20. "pbs_resource":"-lselect=1:ncpus=4:mem=1gb -lwalltime=02:00:00",
  21. "airflow_queue":"hpc_1G,hpc_1G4t"},
  22. "hpc_4G":{
  23. "pbs_resource":"-lselect=1:ncpus=1:mem=4gb -lwalltime=02:00:00",
  24. "airflow_queue":"hpc_1G,hpc_4G"},
  25. "hpc_4G48hr":{
  26. "pbs_resource":"-lselect=1:ncpus=1:mem=4gb -lwalltime=48:00:00",
  27. "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G48hr"},
  28. "hpc_4G4t":{
  29. "pbs_resource":"-lselect=1:ncpus=4:mem=4gb -lwalltime=02:00:00",
  30. "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t"},
  31. "hpc_4G8t":{
  32. "pbs_resource":"-lselect=1:ncpus=8:mem=4gb -lwalltime=02:00:00",
  33. "airflow_queue":"hpc_1G,,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t"},
  34. "hpc_4G16t":{
  35. "pbs_resource":"-lselect=1:ncpus=16:mem=4gb -lwalltime=02:00:00",
  36. "airflow_queue":"hpc_1G,,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t"},
  37. "hpc_8G":{
  38. "pbs_resource":"-lselect=1:ncpus=1:mem=8gb -lwalltime=02:00:00",
  39. "airflow_queue":"hpc_1G,hpc_4G,hpc_8G"},
  40. "hpc_8G4t":{
  41. "pbs_resource":"-lselect=1:ncpus=4:mem=8gb -lwalltime=02:00:00",
  42. "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_8G,hpc_8G4t"},
  43. "hpc_8G8t":{
  44. "pbs_resource":"-lselect=1:ncpus=8:mem=8gb -lwalltime=02:00:00",
  45. "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_8G,hpc_8G4t,hpc_8G8t"},
  46. "hpc_8G16t":{
  47. "pbs_resource":"-lselect=1:ncpus=16:mem=8gb -lwalltime=02:00:00",
  48. "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16t"},
  49. "hpc_16G4t":{
  50. "pbs_resource":"-lselect=1:ncpus=4:mem=16gb -lwalltime=02:00:00",
  51. "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_8G,hpc_8G4t,hpc_16G4t"},
  52. "hpc_16G8t":{
  53. "pbs_resource":"-lselect=1:ncpus=8:mem=16gb -lwalltime=02:00:00",
  54. "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_16G4t,hpc_16G8t"},
  55. "hpc_16G16t":{
  56. "pbs_resource":"-lselect=1:ncpus=16:mem=16gb -lwalltime=02:00:00",
  57. "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16,hpc_16G4t,hpc_16G8t,hpc_16G16t"},
  58. "hpc_32G16t":{
  59. "pbs_resource":"-lselect=1:ncpus=16:mem=32gb -lwalltime=02:00:00",
  60. "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16,hpc_16G4t,hpc_16G8t,hpc_16G16t,hpc_32G16t"},
  61. "hpc_42G16t":{
  62. "pbs_resource":"-lselect=1:ncpus=16:mem=42gb -lwalltime=02:00:00",
  63. "airflow_queue":"hpc_1G,hpc_1G4t,hpc_4G,hpc_4G4t,hpc_4G8t,hpc_4G16t,hpc_8G,hpc_8G4t,hpc_8G8t,hpc_8G16,hpc_16G4t,hpc_16G8t,hpc_16G16t,hpc_32G16,hpc_42G16t"}
  64. }
  65. }