# Copyright (c) 2021 NVIDIA Corporation. All rights reserved. # To build the docker container, run: $ sudo docker build -t nways-labs:latest . # To run: $ sudo docker run --rm -it --runtime nvidia -p 8888:8888 nways-labs:latest # Finally, open http://localhost:8888/ #FROM nvcr.io/nvidia/nvhpc:20.11-devel-cuda_multi-ubuntu20.04 FROM nvidia/cuda:11.2.2-devel-ubuntu20.04 #FROM nvcr.io/nvidia/nvhpc:21.3-devel-cuda_multi-ubuntu20.04 RUN apt-get -y update && \ DEBIAN_FRONTEND=noninteractive apt-get -yq install --no-install-recommends \ python3-dev \ python3-pip python3-setuptools nginx zip make build-essential libtbb-dev && \ rm -rf /var/lib/apt/lists/* RUN pip3 install --no-cache-dir -U install setuptools pip RUN pip3 install gdown RUN pip3 install --no-cache-dir jupyter RUN pip3 install --no-cache-dir "cupy-cuda112==8.6.0" \ numba numpy scipy RUN pip3 install --no-cache-dir MDAnalysis ############################################ # NVIDIA nsight-systems-2020.5.1 ,nsight-compute-2 RUN apt-get update -y && \ DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \ apt-transport-https \ ca-certificates \ gnupg \ wget && \ apt-key adv --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys F60F4B3D7FA2AF80 && \ echo "deb https://developer.download.nvidia.com/devtools/repos/ubuntu2004/amd64/ /" >> /etc/apt/sources.list.d/nsight.list &&\ apt-get update -y #wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \ #bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/anaconda3 && \ #rm Miniconda3-latest-Linux-x86_64.sh RUN DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends nsight-systems-2020.5.1 nsight-compute-2020.2.1 # TO COPY the data COPY nways_labs/ /labs/ RUN python3 /labs/nways_MD/English/C/source_code/dataset.py #RUN python3 /labs/nways_MD/English/Fortran/source_code/dataset.py RUN python3 /labs/nways_MD/English/Python/source_code/dataset.py ################################################# #ENV LD_LIBRARY_PATH="/usr/local/lib:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/cuda/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}" #ENV PATH="/opt/nvidia/nsight-systems/2020.5.1/bin:/opt/nvidia/nsight-compute/2020.2.1:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/usr/local/bin:/opt/anaconda3/bin:/usr/bin${PATH:+:${PATH}}" ENV LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/local/lib:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/cuda/11.2/lib64:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/cuda/lib64:/usr/local/lib/python3.8/dist-packages" ENV PATH="/opt/nvidia/nsight-systems/2020.5.1/bin:/opt/nvidia/nsight-compute/2020.2.1:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/cuda/11.2/include:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/cuda/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/usr/local/bin:/opt/anaconda3/bin:/opt/anaconda3/lib:/usr/bin:$PATH" ################################################# ######################################### ######################################## ADD nways_labs/ /labs WORKDIR /labs CMD service nginx start && jupyter notebook --no-browser --allow-root --ip=0.0.0.0 --port=8888 --NotebookApp.token="" --notebook-dir=/labs