# Copyright (c) 2018 luozhouyang # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in all # copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE # SOFTWARE. from .string_distance import StringDistance class OptimalStringAlignment(StringDistance): def distance(self, s0, s1): if s0 is None: raise TypeError("Argument s0 is NoneType.") if s1 is None: raise TypeError("Argument s1 is NoneType.") if s0 == s1: return 0.0 n, m = len(s0), len(s1) if n == 0: return 1.0 * n if m == 0: return 1.0 * m d = [[0] * (m + 2) for _ in range(n + 2)] for i in range(n + 1): d[i][0] = i for j in range(m + 1): d[0][j] = j for i in range(1, n + 1): for j in range(1, m + 1): cost = 1 if s0[i - 1] == s1[j - 1]: cost = 0 d[i][j] = min(d[i - 1][j - 1] + cost, d[i][j - 1] + 1, d[i - 1][j] + 1) if i > 1 and j > 1 and s0[i - 1] == s1[j - 2] and s0[i - 2] == s1[j - 1]: d[i][j] = min(d[i][j], d[i - 2][j - 2] + cost) return d[n][m]